Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10789110	0.91[EUR][1000 genomes]
rs10889325	0.91[EUR][1000 genomes]
rs10889326	0.91[EUR][1000 genomes]
rs10889328	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889329	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1413821	0.89[ASN][1000 genomes]
rs17123589	0.82[ASN][1000 genomes]
rs3861942	0.91[EUR][1000 genomes]
rs4915617	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4915833	0.90[EUR][1000 genomes]
rs4915834	0.91[EUR][1000 genomes]
rs59304510	0.85[ASN][1000 genomes]
rs59942137	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60459828	0.89[ASN][1000 genomes]
rs61492051	0.85[ASN][1000 genomes]
rs6658385	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6681288	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6693540	0.91[EUR][1000 genomes]
rs72929746	0.89[ASN][1000 genomes]
rs72929771	0.82[ASN][1000 genomes]
rs74079264	0.82[ASN][1000 genomes]
rs7512888	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62864800-62869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:62867000-62871800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:62867200-62883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:62867400-62872400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:62867400-62872400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:62867800-62869200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:62868000-62872000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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