Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62860264..62862036-chr1:62866095..62868741,2	K562	blood:
2	chr1:62750576..62752122-chr1:62863647..62866549,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10789110	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10889325	0.88[ASN][1000 genomes]
rs10889326	0.88[ASN][1000 genomes]
rs10889328	0.89[ASN][1000 genomes]
rs10889329	0.82[ASN][1000 genomes]
rs1473754	0.88[ASN][1000 genomes]
rs17123578	0.80[AFR][1000 genomes]
rs17123589	0.92[ASN][1000 genomes]
rs17123603	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1886829	0.88[ASN][1000 genomes]
rs2065701	0.89[ASN][1000 genomes]
rs2095403	0.88[ASN][1000 genomes]
rs3861942	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4514267	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4915615	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4915617	0.82[ASN][1000 genomes]
rs4915833	0.84[ASN][1000 genomes]
rs4915834	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4915837	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59304510	0.88[ASN][1000 genomes]
rs59942137	0.82[ASN][1000 genomes]
rs60459828	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492051	0.88[ASN][1000 genomes]
rs6587974	0.90[YRI][hapmap]
rs6587975	0.90[YRI][hapmap]
rs6658385	0.91[MEX][hapmap];0.82[ASN][1000 genomes]
rs6681288	0.82[ASN][1000 genomes]
rs6687215	0.82[YRI][hapmap]
rs6693540	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72929741	0.83[AFR][1000 genomes]
rs72929746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929771	0.92[ASN][1000 genomes]
rs74079264	0.92[ASN][1000 genomes]
rs7512888	0.88[ASN][1000 genomes]
rs7543765	0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62861200-62866600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:62862800-62866400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:62863000-62866400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:62863000-62866400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:62863200-62866400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:62863200-62866400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:62864800-62869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:62865400-62866600	Weak transcription	Brain Germinal Matrix	brain
10	chr1:62865600-62866600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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