Variant report

Variant	rs17123580
Chromosome Location	chr10:91306935-91306936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11185761	1.00[AFR][1000 genomes]
rs12411659	1.00[AFR][1000 genomes]
rs12412483	1.00[AFR][1000 genomes]
rs12414275	1.00[AFR][1000 genomes]
rs12415553	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1998842	1.00[AFR][1000 genomes]
rs3758386	1.00[AFR][1000 genomes]
rs3824608	1.00[AFR][1000 genomes]
rs4370841	1.00[AFR][1000 genomes]
rs4934487	1.00[AFR][1000 genomes]
rs4934488	1.00[AFR][1000 genomes]
rs58016375	1.00[AFR][1000 genomes]
rs7392559	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91296400-91307400	Weak transcription	Pancreas	Pancrea
2	chr10:91300400-91308600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:91300800-91307800	Weak transcription	Fetal Heart	heart
4	chr10:91305000-91315600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91305200-91307800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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