Variant report

Variant	rs7392559
Chromosome Location	chr10:91331558-91331559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11185761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12359791	0.81[ASN][1000 genomes]
rs12411659	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12412483	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12414275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12414975	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12415553	1.00[AFR][1000 genomes]
rs17123580	1.00[AFR][1000 genomes]
rs1998842	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758386	1.00[AFR][1000 genomes]
rs3824608	1.00[AFR][1000 genomes]
rs4370841	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4934487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4934488	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58016375	1.00[AFR][1000 genomes]
rs61855207	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91324800-91332800	Weak transcription	Ovary	ovary
2	chr10:91325000-91333200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:91328000-91334000	Weak transcription	Fetal Lung	lung
4	chr10:91328000-91334200	Weak transcription	NHLF	lung
5	chr10:91328200-91347200	Weak transcription	HSMM	muscle
6	chr10:91330400-91334000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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