Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:120748502..120750691-chr11:120774728..120776909,2	MCF-7	breast:
2	chr11:120743310..120746214-chr11:120774459..120776517,2	MCF-7	breast:
3	chr11:120768869..120771121-chr11:120774085..120775927,2	K562	blood:
4	chr11:120774283..120777541-chr11:120778543..120780942,3	MCF-7	breast:
5	chr11:120774008..120776724-chr11:120782605..120784288,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10400347	1.00[MEX][hapmap]
rs12273488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280976	1.00[EUR][1000 genomes]
rs12283136	1.00[EUR][1000 genomes]
rs17124520	1.00[ASW][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17124583	1.00[MEX][hapmap]
rs7109008	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7109138	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109151	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109262	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109612	1.00[EUR][1000 genomes]
rs7122076	1.00[EUR][1000 genomes]
rs7123285	1.00[EUR][1000 genomes]
rs7123557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123915	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589504	1.00[EUR][1000 genomes]
rs73589525	1.00[EUR][1000 genomes]
rs73599482	1.00[EUR][1000 genomes]
rs73599484	1.00[EUR][1000 genomes]
rs73599490	1.00[EUR][1000 genomes]
rs73599492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:120754800-120783600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:120765600-120782400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:120772000-120792200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:120773400-120775400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:120773400-120776800	Enhancers	Esophagus	oesophagus
7	chr11:120773800-120781600	Weak transcription	Gastric	stomach
8	chr11:120774200-120776000	Enhancers	Placenta	Placenta
9	chr11:120774200-120779000	Weak transcription	Fetal Lung	lung
10	chr11:120774600-120776200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:120774800-120779600	Weak transcription	Spleen	Spleen
12	chr11:120774800-120785000	Weak transcription	Ovary	ovary
13	chr11:120775000-120778600	Weak transcription	Fetal Intestine Small	intestine

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