Variant report

Variant	rs73599492
Chromosome Location	chr11:120983929-120983930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:236929948..236930769-chr11:120983445..120983945,2	MCF-7	breast:
2	chr11:120823580..120824185-chr11:120983339..120983938,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10502248	1.00[EUR][1000 genomes]
rs11606279	1.00[EUR][1000 genomes]
rs12278183	1.00[EUR][1000 genomes]
rs12280976	1.00[EUR][1000 genomes]
rs12283136	1.00[EUR][1000 genomes]
rs17124522	1.00[EUR][1000 genomes]
rs17124838	1.00[EUR][1000 genomes]
rs17124943	1.00[EUR][1000 genomes]
rs17125003	1.00[EUR][1000 genomes]
rs17125005	1.00[EUR][1000 genomes]
rs17125007	1.00[EUR][1000 genomes]
rs17125013	1.00[EUR][1000 genomes]
rs17125066	1.00[EUR][1000 genomes]
rs2077203	1.00[EUR][1000 genomes]
rs56068090	1.00[EUR][1000 genomes]
rs59174011	1.00[EUR][1000 genomes]
rs59976776	1.00[EUR][1000 genomes]
rs626945	1.00[EUR][1000 genomes]
rs649404	1.00[EUR][1000 genomes]
rs667418	1.00[EUR][1000 genomes]
rs7103341	1.00[EUR][1000 genomes]
rs7109008	1.00[EUR][1000 genomes]
rs7109138	1.00[EUR][1000 genomes]
rs7109151	1.00[EUR][1000 genomes]
rs7109262	1.00[EUR][1000 genomes]
rs7109612	1.00[EUR][1000 genomes]
rs7112214	1.00[EUR][1000 genomes]
rs7120718	1.00[EUR][1000 genomes]
rs7122076	1.00[EUR][1000 genomes]
rs7122846	1.00[EUR][1000 genomes]
rs7123285	1.00[EUR][1000 genomes]
rs7123557	1.00[EUR][1000 genomes]
rs7123915	1.00[EUR][1000 genomes]
rs73583180	1.00[EUR][1000 genomes]
rs73583183	1.00[EUR][1000 genomes]
rs73583186	1.00[EUR][1000 genomes]
rs73583187	1.00[EUR][1000 genomes]
rs73583191	1.00[EUR][1000 genomes]
rs73583193	1.00[EUR][1000 genomes]
rs73583199	1.00[EUR][1000 genomes]
rs73584905	1.00[EUR][1000 genomes]
rs73584909	1.00[EUR][1000 genomes]
rs73584914	1.00[EUR][1000 genomes]
rs73584917	1.00[EUR][1000 genomes]
rs73589504	1.00[EUR][1000 genomes]
rs73589525	1.00[EUR][1000 genomes]
rs73592731	1.00[EUR][1000 genomes]
rs73592747	1.00[EUR][1000 genomes]
rs73592754	1.00[EUR][1000 genomes]
rs73592756	1.00[EUR][1000 genomes]
rs73592766	1.00[EUR][1000 genomes]
rs73599482	1.00[EUR][1000 genomes]
rs73599484	1.00[EUR][1000 genomes]
rs73599490	1.00[EUR][1000 genomes]
rs73601425	1.00[EUR][1000 genomes]
rs763681	1.00[EUR][1000 genomes]
rs7924615	1.00[EUR][1000 genomes]
rs7926577	1.00[EUR][1000 genomes]
rs7932909	1.00[EUR][1000 genomes]
rs7942732	1.00[EUR][1000 genomes]
rs7946427	1.00[EUR][1000 genomes]
rs891435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120976400-120984200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:120976600-120992200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:120980000-120991000	Weak transcription	Aorta	Aorta
6	chr11:120980600-120998400	Weak transcription	Fetal Brain Female	brain
7	chr11:120981400-120992400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:120982200-120984200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:120983000-120984000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:120983400-120984600	Weak transcription	Fetal Stomach	stomach
11	chr11:120983400-120991000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:120983400-120993400	Weak transcription	Brain Substantia Nigra	brain
13	chr11:120983600-120984000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:120983600-120984400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:120983600-120984800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:120983600-120987600	Weak transcription	Fetal Lung	lung
17	chr11:120983800-120984000	Weak transcription	Lung	lung
18	chr11:120983800-120984600	Weak transcription	HSMMtube	muscle
19	chr11:120983800-120991000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:120983800-120992800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:120983800-120993200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links