Variant report

Variant	rs73589525
Chromosome Location	chr11:120910531-120910532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120909945..120911448-chr11:120913207..120914723,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10502248	1.00[EUR][1000 genomes]
rs11606279	1.00[EUR][1000 genomes]
rs12278183	1.00[EUR][1000 genomes]
rs12280976	1.00[EUR][1000 genomes]
rs12283136	1.00[EUR][1000 genomes]
rs17124522	1.00[EUR][1000 genomes]
rs17124838	1.00[EUR][1000 genomes]
rs17124943	1.00[EUR][1000 genomes]
rs17125003	1.00[EUR][1000 genomes]
rs17125005	1.00[EUR][1000 genomes]
rs17125007	1.00[EUR][1000 genomes]
rs17125013	1.00[EUR][1000 genomes]
rs2077203	1.00[EUR][1000 genomes]
rs56068090	1.00[EUR][1000 genomes]
rs59174011	1.00[EUR][1000 genomes]
rs59976776	1.00[EUR][1000 genomes]
rs626945	1.00[EUR][1000 genomes]
rs649404	1.00[EUR][1000 genomes]
rs667418	1.00[EUR][1000 genomes]
rs7109008	1.00[EUR][1000 genomes]
rs7109138	1.00[EUR][1000 genomes]
rs7109151	1.00[EUR][1000 genomes]
rs7109262	1.00[EUR][1000 genomes]
rs7109612	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120718	1.00[EUR][1000 genomes]
rs7122076	1.00[EUR][1000 genomes]
rs7122846	1.00[EUR][1000 genomes]
rs7123285	1.00[EUR][1000 genomes]
rs7123557	1.00[EUR][1000 genomes]
rs7123915	1.00[EUR][1000 genomes]
rs73583180	1.00[EUR][1000 genomes]
rs73583183	1.00[EUR][1000 genomes]
rs73583186	1.00[EUR][1000 genomes]
rs73583187	1.00[EUR][1000 genomes]
rs73583191	1.00[EUR][1000 genomes]
rs73583193	1.00[EUR][1000 genomes]
rs73583199	1.00[EUR][1000 genomes]
rs73584905	1.00[EUR][1000 genomes]
rs73584909	1.00[EUR][1000 genomes]
rs73584914	1.00[EUR][1000 genomes]
rs73584917	1.00[EUR][1000 genomes]
rs73589504	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73599482	1.00[EUR][1000 genomes]
rs73599484	1.00[EUR][1000 genomes]
rs73599490	1.00[EUR][1000 genomes]
rs73599492	1.00[EUR][1000 genomes]
rs73601425	1.00[EUR][1000 genomes]
rs763681	1.00[EUR][1000 genomes]
rs7924615	1.00[EUR][1000 genomes]
rs7926577	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1039908	chr11:120904893-120936907	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120895800-120918000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:120896000-120910800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:120896000-120910800	Weak transcription	Gastric	stomach
4	chr11:120896000-120915400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:120896000-120919600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:120896000-120938600	Weak transcription	Lung	lung
7	chr11:120896200-120913000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:120896200-120916200	Weak transcription	HSMM	muscle
9	chr11:120896200-120916400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:120896200-120916600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:120896200-120924200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:120896400-120916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:120896400-120917800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:120896400-120918000	Weak transcription	Brain Germinal Matrix	brain
16	chr11:120896400-120924400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:120896600-120917200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:120896600-120917600	Weak transcription	Fetal Brain Female	brain
19	chr11:120896600-120917800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:120896600-120924000	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:120896600-120938200	Weak transcription	Fetal Stomach	stomach
22	chr11:120896800-120912200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:120896800-120917600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:120898800-120938400	Weak transcription	Aorta	Aorta
25	chr11:120899200-120912600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:120900800-120917800	Weak transcription	HSMMtube	muscle
27	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:120901000-120910800	Weak transcription	Psoas Muscle	Psoas
29	chr11:120901000-120917600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:120901200-120918000	Weak transcription	Left Ventricle	heart
31	chr11:120901400-120915600	Weak transcription	Primary T cells from cord blood	blood
32	chr11:120901400-120924200	Weak transcription	Right Ventricle	heart
33	chr11:120901800-120916400	Weak transcription	Primary B cells from cord blood	blood
34	chr11:120903800-120916400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:120905600-120924400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:120905800-120941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:120906000-120924400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:120906200-120911800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:120906600-120910600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:120906800-120916800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:120907200-120913000	Weak transcription	Fetal Lung	lung
42	chr11:120907200-120918000	Weak transcription	GM12878-XiMat	blood
43	chr11:120907200-120924200	Weak transcription	Pancreas	Pancrea
44	chr11:120907600-120910800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:120907800-120917400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:120908200-120918200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:120908600-120911000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:120909000-120910800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr11:120909000-120911600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr11:120909000-120912200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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