Variant report

Variant	rs73601425
Chromosome Location	chr11:121002257-121002258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10502248	1.00[EUR][1000 genomes]
rs11606279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278183	1.00[EUR][1000 genomes]
rs17124838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124943	1.00[EUR][1000 genomes]
rs17125003	1.00[EUR][1000 genomes]
rs17125005	1.00[EUR][1000 genomes]
rs17125007	1.00[EUR][1000 genomes]
rs17125013	1.00[EUR][1000 genomes]
rs17125066	1.00[EUR][1000 genomes]
rs2077203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56068090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59174011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59976776	1.00[EUR][1000 genomes]
rs626945	1.00[EUR][1000 genomes]
rs649404	1.00[EUR][1000 genomes]
rs667418	1.00[EUR][1000 genomes]
rs7103341	1.00[EUR][1000 genomes]
rs7109612	1.00[EUR][1000 genomes]
rs7112214	1.00[EUR][1000 genomes]
rs7120718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122846	1.00[EUR][1000 genomes]
rs73583180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583191	1.00[EUR][1000 genomes]
rs73583193	1.00[EUR][1000 genomes]
rs73583199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589504	1.00[EUR][1000 genomes]
rs73589525	1.00[EUR][1000 genomes]
rs73592731	1.00[EUR][1000 genomes]
rs73592747	1.00[EUR][1000 genomes]
rs73592754	1.00[EUR][1000 genomes]
rs73592756	1.00[EUR][1000 genomes]
rs73592766	1.00[EUR][1000 genomes]
rs73599482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73599484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73599490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73599492	1.00[EUR][1000 genomes]
rs763681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7924615	1.00[EUR][1000 genomes]
rs7926577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932909	1.00[EUR][1000 genomes]
rs7942732	1.00[EUR][1000 genomes]
rs7946427	1.00[EUR][1000 genomes]
rs891435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120993200-121008000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:120994000-121016200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:120996400-121005200	Weak transcription	HSMMtube	muscle
6	chr11:120996800-121005400	Weak transcription	Left Ventricle	heart
7	chr11:120996800-121016400	Weak transcription	Ovary	ovary
8	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:120997200-121005000	Weak transcription	Right Atrium	heart
10	chr11:120998000-121002400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:120998400-121007800	Weak transcription	Fetal Brain Male	brain
12	chr11:120998800-121007800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:120998800-121009400	Weak transcription	Spleen	Spleen
14	chr11:120999000-121007800	Weak transcription	Gastric	stomach
15	chr11:120999000-121011200	Weak transcription	Aorta	Aorta
16	chr11:120999200-121016200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:120999400-121004400	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:120999600-121007800	Weak transcription	Brain Germinal Matrix	brain
19	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:121001000-121005200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:121001000-121008400	Weak transcription	Fetal Brain Female	brain
23	chr11:121001200-121007800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:121001200-121012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
26	chr11:121002000-121003200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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