Variant report

Variant	rs73592766
Chromosome Location	chr11:121183963-121183964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121183918..121185810-chr11:121187037..121189275,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10502248	1.00[EUR][1000 genomes]
rs11606279	1.00[EUR][1000 genomes]
rs12278183	1.00[EUR][1000 genomes]
rs17124838	1.00[EUR][1000 genomes]
rs17124943	1.00[EUR][1000 genomes]
rs17125003	1.00[EUR][1000 genomes]
rs17125005	1.00[EUR][1000 genomes]
rs17125007	1.00[EUR][1000 genomes]
rs17125013	1.00[EUR][1000 genomes]
rs17125022	1.00[ASN][1000 genomes]
rs17125066	1.00[EUR][1000 genomes]
rs2077203	1.00[EUR][1000 genomes]
rs56068090	1.00[EUR][1000 genomes]
rs57169355	1.00[EUR][1000 genomes]
rs57946918	1.00[ASN][1000 genomes]
rs58182842	1.00[ASN][1000 genomes]
rs59174011	1.00[EUR][1000 genomes]
rs59976776	1.00[EUR][1000 genomes]
rs60234153	1.00[ASN][1000 genomes]
rs626945	1.00[EUR][1000 genomes]
rs649404	1.00[EUR][1000 genomes]
rs667418	1.00[EUR][1000 genomes]
rs7103341	1.00[EUR][1000 genomes]
rs7112214	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120718	1.00[EUR][1000 genomes]
rs7122846	1.00[EUR][1000 genomes]
rs73583180	1.00[EUR][1000 genomes]
rs73583183	1.00[EUR][1000 genomes]
rs73583186	1.00[EUR][1000 genomes]
rs73583187	1.00[EUR][1000 genomes]
rs73583191	1.00[EUR][1000 genomes]
rs73583193	1.00[EUR][1000 genomes]
rs73583199	1.00[EUR][1000 genomes]
rs73584905	1.00[EUR][1000 genomes]
rs73584909	1.00[EUR][1000 genomes]
rs73584914	1.00[EUR][1000 genomes]
rs73584917	1.00[EUR][1000 genomes]
rs73592731	1.00[EUR][1000 genomes]
rs73592747	1.00[EUR][1000 genomes]
rs73592754	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592762	1.00[ASN][1000 genomes]
rs73596704	1.00[EUR][1000 genomes]
rs73599482	1.00[EUR][1000 genomes]
rs73599484	1.00[EUR][1000 genomes]
rs73599490	1.00[EUR][1000 genomes]
rs73599492	1.00[EUR][1000 genomes]
rs73601425	1.00[EUR][1000 genomes]
rs763681	1.00[EUR][1000 genomes]
rs7924615	1.00[EUR][1000 genomes]
rs7926577	1.00[EUR][1000 genomes]
rs7932909	1.00[EUR][1000 genomes]
rs7942732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946427	1.00[EUR][1000 genomes]
rs891435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121165000-121189400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:121171600-121189600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121171800-121190200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:121176200-121190000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:121178000-121186600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:121178000-121190000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:121178200-121185600	Weak transcription	Lung	lung
8	chr11:121178200-121189800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:121178200-121189800	Weak transcription	Fetal Brain Male	brain
10	chr11:121178200-121190200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:121178200-121190200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:121178200-121196400	Weak transcription	Ovary	ovary
13	chr11:121178400-121189800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:121178400-121190000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:121178400-121192400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:121178600-121189400	Weak transcription	Fetal Intestine Large	intestine
17	chr11:121178600-121190200	Weak transcription	NHEK	skin
18	chr11:121178600-121192400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:121178600-121192800	Weak transcription	Right Ventricle	heart
20	chr11:121178800-121189800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:121178800-121190000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:121178800-121190200	Weak transcription	Brain Anterior Caudate	brain
23	chr11:121178800-121192200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:121178800-121192200	Weak transcription	Brain Angular Gyrus	brain
25	chr11:121178800-121192200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:121178800-121194000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:121179000-121192000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:121179400-121184200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:121179400-121185600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:121179600-121184000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:121179800-121189600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:121179800-121190200	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:121180000-121184000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:121180000-121184000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:121180000-121185000	Weak transcription	NHDF-Ad	bronchial
36	chr11:121180000-121189600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:121180000-121190200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:121180000-121190200	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:121180000-121192600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:121180000-121198200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:121180200-121188200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:121180200-121188800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:121180200-121190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:121180200-121192400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr11:121180200-121192400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:121180200-121193800	Weak transcription	Fetal Brain Female	brain
47	chr11:121180200-121194000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:121180600-121184000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:121180600-121189200	Weak transcription	Dnd41	blood
50	chr11:121180600-121189600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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