Variant report

Variant	rs57169355
Chromosome Location	chr11:121206981-121206982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10502248	1.00[EUR][1000 genomes]
rs11606279	1.00[EUR][1000 genomes]
rs12278183	1.00[EUR][1000 genomes]
rs17124838	1.00[EUR][1000 genomes]
rs17124943	1.00[EUR][1000 genomes]
rs17125003	1.00[EUR][1000 genomes]
rs17125005	1.00[EUR][1000 genomes]
rs17125007	1.00[EUR][1000 genomes]
rs17125013	1.00[EUR][1000 genomes]
rs17125066	1.00[EUR][1000 genomes]
rs2077203	1.00[EUR][1000 genomes]
rs56068090	1.00[EUR][1000 genomes]
rs59174011	1.00[EUR][1000 genomes]
rs59976776	1.00[EUR][1000 genomes]
rs626945	1.00[EUR][1000 genomes]
rs649404	1.00[EUR][1000 genomes]
rs667418	1.00[EUR][1000 genomes]
rs7103341	1.00[EUR][1000 genomes]
rs7112214	1.00[EUR][1000 genomes]
rs7120718	1.00[EUR][1000 genomes]
rs7122846	1.00[EUR][1000 genomes]
rs73583180	1.00[EUR][1000 genomes]
rs73583183	1.00[EUR][1000 genomes]
rs73583186	1.00[EUR][1000 genomes]
rs73583187	1.00[EUR][1000 genomes]
rs73583191	1.00[EUR][1000 genomes]
rs73583193	1.00[EUR][1000 genomes]
rs73583199	1.00[EUR][1000 genomes]
rs73583200	1.00[AMR][1000 genomes]
rs73584905	1.00[EUR][1000 genomes]
rs73584909	1.00[EUR][1000 genomes]
rs73584914	1.00[EUR][1000 genomes]
rs73584917	1.00[EUR][1000 genomes]
rs73584929	1.00[AMR][1000 genomes]
rs73584964	1.00[AMR][1000 genomes]
rs73584966	1.00[AMR][1000 genomes]
rs73592731	1.00[EUR][1000 genomes]
rs73592747	1.00[EUR][1000 genomes]
rs73592754	1.00[EUR][1000 genomes]
rs73592756	1.00[EUR][1000 genomes]
rs73592766	1.00[EUR][1000 genomes]
rs73594719	1.00[AMR][1000 genomes]
rs73594745	1.00[AMR][1000 genomes]
rs73596704	1.00[EUR][1000 genomes]
rs73596709	1.00[AMR][1000 genomes]
rs763681	1.00[EUR][1000 genomes]
rs7924615	1.00[EUR][1000 genomes]
rs7926577	1.00[EUR][1000 genomes]
rs7932909	1.00[EUR][1000 genomes]
rs7942732	1.00[EUR][1000 genomes]
rs7946427	1.00[EUR][1000 genomes]
rs891435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121199400-121215800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:121200400-121210000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:121204400-121208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:121204600-121207400	Weak transcription	Fetal Lung	lung
5	chr11:121204600-121208000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:121205200-121208000	Enhancers	GM12878-XiMat	blood
7	chr11:121205600-121207800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:121205600-121208800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:121205600-121209800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:121205600-121210200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:121205600-121212000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:121205800-121208400	Weak transcription	Adipose Nuclei	Adipose
13	chr11:121206000-121209600	Enhancers	Fetal Muscle Leg	muscle
14	chr11:121206200-121207000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:121206200-121207600	Weak transcription	Right Atrium	heart
16	chr11:121206200-121208000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:121206200-121208000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:121206400-121207400	Weak transcription	Brain Germinal Matrix	brain
19	chr11:121206400-121207800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:121206400-121207800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:121206400-121208200	Weak transcription	Ovary	ovary
22	chr11:121206400-121208400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:121206600-121207800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:121206600-121207800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:121206600-121208200	Weak transcription	Fetal Brain Female	brain
26	chr11:121206800-121209200	Enhancers	Brain Hippocampus Middle	brain

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