The 2.0 version of rSNPBase

Variant report

Variant rs17127986
Chromosome Location chr1:86090720-86090721
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86079200-86094400 Weak transcription Pancreas Pancrea
2 chr1:86083800-86095200 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:86083800-86103200 Weak transcription Brain Cingulate Gyrus brain
4 chr1:86084600-86092800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:86085800-86093200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:86087400-86094400 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr1:86088200-86094400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:86088200-86101800 Weak transcription Primary T cells fromperipheralblood blood
9 chr1:86088400-86094200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr1:86088400-86101400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:86088400-86102000 Weak transcription Duodenum Mucosa Duodenum
12 chr1:86088400-86103000 Weak transcription Brain Hippocampus Middle brain
13 chr1:86088600-86091800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:86088600-86092200 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:86088600-86092400 Weak transcription Psoas Muscle Psoas
16 chr1:86088600-86094400 Weak transcription Fetal Intestine Large intestine
17 chr1:86088600-86094400 Weak transcription Left Ventricle heart
18 chr1:86088600-86094800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:86088600-86094800 Weak transcription Right Ventricle heart
20 chr1:86088600-86101800 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:86088600-86103000 Weak transcription NHEK skin
22 chr1:86088800-86093000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:86088800-86093400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:86088800-86094200 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:86088800-86094200 Weak transcription Liver Liver
26 chr1:86088800-86094400 Weak transcription H1 Cell Line embryonic stem cell
27 chr1:86088800-86094400 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr1:86088800-86094400 Weak transcription Fetal Muscle Leg muscle
29 chr1:86088800-86094600 Weak transcription Fetal Intestine Small intestine
30 chr1:86088800-86094800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:86088800-86094800 Weak transcription Esophagus oesophagus
32 chr1:86088800-86101000 Weak transcription Dnd41 blood
33 chr1:86088800-86101800 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr1:86088800-86101800 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:86089200-86094200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:86089200-86094200 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr1:86089400-86091000 Weak transcription Osteobl bone
38 chr1:86089400-86091200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:86089400-86091800 Weak transcription Primary B cells from cord blood blood
40 chr1:86089400-86092400 Weak transcription HSMMtube muscle
41 chr1:86089400-86092400 Weak transcription K562 blood
42 chr1:86089400-86093000 Weak transcription NHDF-Ad bronchial
43 chr1:86089400-86093200 Weak transcription NHLF lung
44 chr1:86089400-86093600 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr1:86089400-86094200 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr1:86089400-86094400 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr1:86089400-86094400 Weak transcription Placenta Placenta
48 chr1:86089400-86094600 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr1:86089400-86094800 Weak transcription Ovary ovary
50 chr1:86089400-86102600 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015