The 2.0 version of rSNPBase

Variant report

Variant rs17127994
Chromosome Location chr1:86097286-86097287
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86083800-86103200 Weak transcription Brain Cingulate Gyrus brain
2 chr1:86088200-86101800 Weak transcription Primary T cells fromperipheralblood blood
3 chr1:86088400-86101400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:86088400-86102000 Weak transcription Duodenum Mucosa Duodenum
5 chr1:86088400-86103000 Weak transcription Brain Hippocampus Middle brain
6 chr1:86088600-86101800 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:86088600-86103000 Weak transcription NHEK skin
8 chr1:86088800-86101000 Weak transcription Dnd41 blood
9 chr1:86088800-86101800 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr1:86088800-86101800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:86089400-86102600 Weak transcription GM12878-XiMat blood
12 chr1:86089400-86103000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:86091200-86103200 Weak transcription Brain Angular Gyrus brain
14 chr1:86091800-86102400 Weak transcription Primary B cells from peripheral blood blood
15 chr1:86091800-86107600 Weak transcription Colonic Mucosa Colon
16 chr1:86092200-86102000 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr1:86093200-86098800 Weak transcription Primary B cells from cord blood blood
18 chr1:86093200-86102400 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr1:86093600-86101200 Weak transcription Primary hematopoietic stem cells blood
20 chr1:86094000-86118600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:86094600-86101000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr1:86094800-86102000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:86094800-86103200 Weak transcription Small Intestine intestine
24 chr1:86095000-86102000 Weak transcription Fetal Muscle Trunk muscle
25 chr1:86095000-86102400 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr1:86095000-86102800 Weak transcription Colon Smooth Muscle Colon
27 chr1:86095000-86103200 Weak transcription Fetal Heart heart
28 chr1:86095200-86100200 Weak transcription Left Ventricle heart
29 chr1:86095200-86100800 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr1:86095200-86101800 Weak transcription Fetal Intestine Small intestine
31 chr1:86095200-86101800 Weak transcription Stomach Smooth Muscle stomach
32 chr1:86095200-86102000 Weak transcription Esophagus oesophagus
33 chr1:86095200-86102000 Weak transcription Fetal Intestine Large intestine
34 chr1:86095200-86102400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:86095200-86102600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:86095200-86102800 Weak transcription Fetal Stomach stomach
37 chr1:86095200-86103000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:86095200-86103000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:86095200-86103000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:86095200-86103000 Weak transcription Gastric stomach
41 chr1:86095200-86103000 Weak transcription Ovary ovary
42 chr1:86095200-86103000 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:86095200-86103000 Weak transcription Spleen Spleen
44 chr1:86095200-86104200 Weak transcription Psoas Muscle Psoas
45 chr1:86095200-86104400 Weak transcription Right Ventricle heart
46 chr1:86095400-86101800 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:86095400-86101800 Weak transcription Fetal Muscle Leg muscle
48 chr1:86095400-86102600 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr1:86095400-86102800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr1:86095400-86103000 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015