Variant report
| Variant | rs17128233 |
|---|---|
| Chromosome Location | chr12:40852535-40852536 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:40852289..40854135-chr12:40855976..40858813,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MUC19-1 | chr12:40852533-40852571 | NONHSAT027728 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10506153 | 1.00[CHB][hapmap] |
| rs11564128 | 1.00[CHB][hapmap] |
| rs11564175 | 1.00[CHB][hapmap] |
| rs11564177 | 1.00[CHB][hapmap] |
| rs11564204 | 1.00[CHB][hapmap] |
| rs11564205 | 1.00[CHB][hapmap] |
| rs11564207 | 1.00[CHB][hapmap] |
| rs11564267 | 1.00[CHB][hapmap] |
| rs11829088 | 1.00[CHB][hapmap] |
| rs11834950 | 1.00[CHB][hapmap] |
| rs17443552 | 1.00[CHB][hapmap] |
| rs17444542 | 1.00[CHB][hapmap] |
| rs17465912 | 1.00[CHB][hapmap] |
| rs17466037 | 1.00[CHB][hapmap] |
| rs17466339 | 1.00[CHB][hapmap] |
| rs17467095 | 1.00[CHB][hapmap] |
| rs17491061 | 1.00[CHB][hapmap] |
| rs17492138 | 1.00[CHB][hapmap] |
| rs17520251 | 1.00[CHB][hapmap] |
| rs17520278 | 1.00[CHB][hapmap] |
| rs73094605 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73100414 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73110067 | 0.82[EUR][1000 genomes] |
| rs73110075 | 0.82[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9705735 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832377 | chr12:40704881-40855223 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv558606 | chr12:40837331-40863052 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
