Variant report

Variant	rs73110067
Chromosome Location	chr12:40899153-40899154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10506153	1.00[ASN][1000 genomes]
rs11564175	1.00[ASN][1000 genomes]
rs11564203	1.00[ASN][1000 genomes]
rs11564267	1.00[ASN][1000 genomes]
rs11829088	1.00[ASN][1000 genomes]
rs11834950	1.00[ASN][1000 genomes]
rs1444203	1.00[ASN][1000 genomes]
rs1444204	1.00[ASN][1000 genomes]
rs17128233	0.82[EUR][1000 genomes]
rs17128385	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128536	1.00[ASN][1000 genomes]
rs17444096	1.00[ASN][1000 genomes]
rs17444542	1.00[ASN][1000 genomes]
rs17444612	1.00[ASN][1000 genomes]
rs17466430	1.00[ASN][1000 genomes]
rs17492082	1.00[ASN][1000 genomes]
rs17492138	1.00[ASN][1000 genomes]
rs17520251	1.00[ASN][1000 genomes]
rs17520278	1.00[ASN][1000 genomes]
rs2114567	1.00[ASN][1000 genomes]
rs2405018	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55775102	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56032335	1.00[ASN][1000 genomes]
rs56245194	1.00[ASN][1000 genomes]
rs56322620	1.00[ASN][1000 genomes]
rs57997594	1.00[ASN][1000 genomes]
rs59066229	1.00[ASN][1000 genomes]
rs60776971	1.00[ASN][1000 genomes]
rs61007767	1.00[ASN][1000 genomes]
rs73094605	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100409	1.00[ASN][1000 genomes]
rs73100414	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73110075	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115378	1.00[ASN][1000 genomes]
rs73115394	1.00[ASN][1000 genomes]
rs73115401	1.00[ASN][1000 genomes]
rs73117512	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73119913	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73123118	1.00[ASN][1000 genomes]
rs73123119	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73123140	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7314530	1.00[ASN][1000 genomes]
rs73275761	1.00[ASN][1000 genomes]
rs73279554	1.00[ASN][1000 genomes]
rs73279557	1.00[ASN][1000 genomes]
rs74078532	1.00[ASN][1000 genomes]
rs7484715	1.00[ASN][1000 genomes]
rs7959703	1.00[ASN][1000 genomes]
rs9705735	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3519672	chr12:40898422-40907859	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv983435	chr12:40898783-40903918	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3377041	chr12:40898929-40905079	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv9377	chr12:40898931-40905123	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3387261	chr12:40898980-40905120	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3519673	chr12:40898984-40905196	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3519675	chr12:40898984-40905196	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv512268	chr12:40899000-40905722	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3402193	chr12:40899025-40905131	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3431848	chr12:40899046-40902055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3447251	chr12:40899046-40905008	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3524253	chr12:40899064-40905070	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3524254	chr12:40899064-40905070	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3349674	chr12:40899126-40905088	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3446930	chr12:40899146-40905058	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40894800-40908600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:40898800-40899200	Enhancers	Lung	lung
3	chr12:40898800-40899200	Enhancers	GM12878-XiMat	blood
4	chr12:40899000-40900000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links