Variant report

Variant	rs55775102
Chromosome Location	chr12:40914061-40914062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr12:40913882-40914193	GM12878	blood:	n/a	n/a
2	RUNX3	chr12:40913540-40914223	GM12878	blood:	n/a	n/a
3	NFIC	chr12:40913475-40914144	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MUC19	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1348509	1.00[ASN][1000 genomes]
rs1444203	1.00[ASN][1000 genomes]
rs1444204	1.00[ASN][1000 genomes]
rs17128385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128536	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17444542	1.00[ASN][1000 genomes]
rs17444612	1.00[ASN][1000 genomes]
rs17492082	1.00[ASN][1000 genomes]
rs17492138	1.00[ASN][1000 genomes]
rs1816856	1.00[ASN][1000 genomes]
rs1992607	1.00[ASN][1000 genomes]
rs2114567	1.00[ASN][1000 genomes]
rs2120599	1.00[ASN][1000 genomes]
rs2405018	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55736346	1.00[ASN][1000 genomes]
rs56032335	1.00[ASN][1000 genomes]
rs56245194	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56322620	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56383533	1.00[ASN][1000 genomes]
rs57997594	1.00[ASN][1000 genomes]
rs59066229	1.00[ASN][1000 genomes]
rs6581906	1.00[ASN][1000 genomes]
rs73094605	1.00[ASN][1000 genomes]
rs73100409	1.00[ASN][1000 genomes]
rs73100414	1.00[ASN][1000 genomes]
rs73110067	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73110075	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115378	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115394	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115401	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73117512	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73119913	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73123118	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73123119	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73123140	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7314530	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73279554	1.00[ASN][1000 genomes]
rs73279557	1.00[ASN][1000 genomes]
rs74078532	1.00[ASN][1000 genomes]
rs7484715	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7959703	1.00[ASN][1000 genomes]
rs9705735	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv8970	chr12:40904094-40951213	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv975629	chr12:40912282-40917375	Enhancers Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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