Variant report
| Variant | rs17131094 |
|---|---|
| Chromosome Location | chr1:91070046-91070047 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-BARHL2-4 | chr1:91067692-91070341 | NONHSAT004397 |
| 2 | lnc-BARHL2-4 | chr1:91069670-91070341 | NONHSAT004398 |
| 3 | lnc-BARHL2-4 | chr1:91070014-91070341 | NONHSAT004399 |
| 4 | lnc-BARHL2-4 | chr1:91069894-91070341 | l_86_chr1:91020674-91074002_brain |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10493838 | 1.00[ASN][1000 genomes] |
| rs10801817 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10922869 | 1.00[ASN][1000 genomes] |
| rs10922870 | 1.00[ASN][1000 genomes] |
| rs10922878 | 0.86[EUR][1000 genomes] |
| rs12061177 | 1.00[ASN][1000 genomes] |
| rs12090588 | 0.93[EUR][1000 genomes] |
| rs12094515 | 1.00[ASN][1000 genomes] |
| rs1336874 | 1.00[ASN][1000 genomes] |
| rs1415140 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131074 | 0.88[ASN][1000 genomes] |
| rs1893672 | 1.00[ASN][1000 genomes] |
| rs1954970 | 1.00[ASN][1000 genomes] |
| rs28488175 | 0.85[EUR][1000 genomes] |
| rs535756 | 0.88[ASN][1000 genomes] |
| rs6657340 | 0.97[ASN][1000 genomes] |
| rs6684834 | 1.00[ASN][1000 genomes] |
| rs7525937 | 0.88[ASN][1000 genomes] |
| rs7533106 | 0.88[ASN][1000 genomes] |
| rs7543781 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7545462 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs885141 | 1.00[ASN][1000 genomes] |
| rs954472 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv870816 | chr1:91018205-91141196 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3323556 | chr1:91052980-91071967 | Enhancers ZNF genes & repeats Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
