Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493838	1.00[ASN][1000 genomes]
rs10801817	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922869	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922870	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922878	0.85[EUR][1000 genomes]
rs12061177	1.00[ASN][1000 genomes]
rs12090588	0.86[EUR][1000 genomes]
rs12094515	1.00[ASN][1000 genomes]
rs1336874	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1415140	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131074	0.88[ASN][1000 genomes]
rs17131094	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893672	1.00[ASN][1000 genomes]
rs1954970	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28488175	0.86[EUR][1000 genomes]
rs535756	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6657340	0.97[ASN][1000 genomes]
rs6684834	1.00[ASN][1000 genomes]
rs7525937	0.88[ASN][1000 genomes]
rs7533106	0.88[ASN][1000 genomes]
rs7543781	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885141	1.00[ASN][1000 genomes]
rs954472	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870816	chr1:91018205-91141196	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91024000-91035600	Enhancers	Dnd41	blood
2	chr1:91028200-91033800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:91030800-91033600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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