Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493838	1.00[ASN][1000 genomes]
rs10801817	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922869	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922870	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922878	0.85[EUR][1000 genomes]
rs12061177	1.00[ASN][1000 genomes]
rs12090588	0.86[EUR][1000 genomes]
rs12094515	1.00[ASN][1000 genomes]
rs1336874	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1415140	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131074	0.88[ASN][1000 genomes]
rs17131094	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893672	1.00[ASN][1000 genomes]
rs1954970	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28488175	0.86[EUR][1000 genomes]
rs535756	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6657340	0.97[ASN][1000 genomes]
rs6684834	1.00[ASN][1000 genomes]
rs7525937	0.88[ASN][1000 genomes]
rs7533106	0.88[ASN][1000 genomes]
rs7545462	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885141	1.00[ASN][1000 genomes]
rs954472	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870816	chr1:91018205-91141196	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7543781	ZNF644	cis	temporal cortex	BrainEAC

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91024000-91035600	Enhancers	Dnd41	blood
2	chr1:91024400-91029400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr1:91025600-91028600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr1:91025600-91029800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr1:91026400-91028400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:91027200-91028000	Enhancers	Fetal Brain Male	brain
7	chr1:91027200-91028200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr1:91027200-91028200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:91027200-91028600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:91027400-91028200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:91027600-91028800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:91027600-91029000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr1:91027800-91028000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr1:91027800-91028000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
15	chr1:91027800-91028000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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