Variant report

Variant	rs17132446
Chromosome Location	chr7:48579452-48579453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs12718264	0.84[AMR][1000 genomes]
rs12718273	0.84[AMR][1000 genomes]
rs12718275	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12718276	1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12718283	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718284	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718287	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13221147	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13223000	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13224880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13225206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226837	0.84[AMR][1000 genomes]
rs13227867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234500	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13235315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13239031	0.84[AMR][1000 genomes]
rs13240229	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13244050	0.84[AMR][1000 genomes]
rs1527836	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17132435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17132437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17132489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34021932	1.00[ASN][1000 genomes]
rs34096705	1.00[ASN][1000 genomes]
rs34364517	1.00[ASN][1000 genomes]
rs34371536	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34418856	0.84[EUR][1000 genomes]
rs34449910	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34508623	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34527719	1.00[ASN][1000 genomes]
rs34544554	1.00[ASN][1000 genomes]
rs34551031	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611305	1.00[ASN][1000 genomes]
rs34651672	1.00[ASN][1000 genomes]
rs34652761	1.00[ASN][1000 genomes]
rs34768692	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34798730	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34836438	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34974785	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35022901	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35072701	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35099077	1.00[ASN][1000 genomes]
rs35108065	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35302464	1.00[ASN][1000 genomes]
rs35425284	0.84[AMR][1000 genomes]
rs35512908	1.00[ASN][1000 genomes]
rs35568687	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35573123	1.00[ASN][1000 genomes]
rs35600681	1.00[ASN][1000 genomes]
rs35603493	1.00[ASN][1000 genomes]
rs35621720	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35825254	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35860070	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896585	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35901095	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35915440	1.00[ASN][1000 genomes]
rs35952216	0.84[AMR][1000 genomes]
rs35987825	0.84[AMR][1000 genomes]
rs55836959	1.00[ASN][1000 genomes]
rs57739046	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58511932	1.00[ASN][1000 genomes]
rs58707711	1.00[ASN][1000 genomes]
rs59081912	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61378229	1.00[ASN][1000 genomes]
rs61705907	1.00[ASN][1000 genomes]
rs62447286	0.84[AMR][1000 genomes]
rs62447289	0.84[AMR][1000 genomes]
rs62447291	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62447294	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62447295	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62447308	1.00[ASN][1000 genomes]
rs62447309	1.00[ASN][1000 genomes]
rs62447313	1.00[ASN][1000 genomes]
rs62447314	1.00[ASN][1000 genomes]
rs62447315	1.00[ASN][1000 genomes]
rs62447317	1.00[ASN][1000 genomes]
rs62447319	1.00[ASN][1000 genomes]
rs62447326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447337	1.00[ASN][1000 genomes]
rs62447338	1.00[ASN][1000 genomes]
rs6583453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71537791	1.00[ASN][1000 genomes]
rs71537792	1.00[ASN][1000 genomes]
rs71547889	0.85[AMR][1000 genomes]
rs71547892	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7779786	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7783286	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788437	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803637	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48574200-48581200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48577600-48579800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:48577600-48581400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:48579400-48580600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:48579400-48580600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links