Variant report

Variant	rs34449910
Chromosome Location	chr7:48526831-48526832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs12718264	0.91[AMR][1000 genomes]
rs12718273	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12718275	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718276	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718283	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12718284	1.00[ASN][1000 genomes]
rs12718285	1.00[ASN][1000 genomes]
rs12718286	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12718287	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13221147	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223000	1.00[ASN][1000 genomes]
rs13224880	1.00[ASN][1000 genomes]
rs13225206	1.00[ASN][1000 genomes]
rs13226837	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13227867	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13228431	1.00[ASN][1000 genomes]
rs13230347	1.00[ASN][1000 genomes]
rs13231485	1.00[ASN][1000 genomes]
rs13234500	1.00[ASN][1000 genomes]
rs13235315	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13237182	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13239031	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13240229	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244050	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1527836	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132435	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132437	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132446	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17132489	1.00[ASN][1000 genomes]
rs34021932	1.00[ASN][1000 genomes]
rs34096705	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364517	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34371536	1.00[ASN][1000 genomes]
rs34508623	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34527719	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34544554	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34551031	1.00[ASN][1000 genomes]
rs34611305	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34651672	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652761	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34768692	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34798730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34836438	1.00[ASN][1000 genomes]
rs34941461	0.82[EUR][1000 genomes]
rs34974785	1.00[ASN][1000 genomes]
rs35022901	1.00[ASN][1000 genomes]
rs35072701	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35099077	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35108065	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35302464	1.00[ASN][1000 genomes]
rs35425284	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35512908	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35568687	1.00[ASN][1000 genomes]
rs35573123	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35600681	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35603493	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621720	1.00[ASN][1000 genomes]
rs35825254	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35860070	1.00[ASN][1000 genomes]
rs35896585	1.00[ASN][1000 genomes]
rs35901095	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35915440	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952216	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35987825	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55836959	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57739046	1.00[ASN][1000 genomes]
rs58511932	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707711	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59081912	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61378229	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61705907	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447286	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62447289	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62447291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447294	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447295	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447308	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447309	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447313	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447314	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447315	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447317	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447319	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447326	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62447337	1.00[ASN][1000 genomes]
rs62447338	1.00[ASN][1000 genomes]
rs6583453	1.00[ASN][1000 genomes]
rs6583454	1.00[ASN][1000 genomes]
rs6583455	1.00[ASN][1000 genomes]
rs6946184	1.00[ASN][1000 genomes]
rs6973889	1.00[ASN][1000 genomes]
rs6977751	1.00[ASN][1000 genomes]
rs6977918	1.00[ASN][1000 genomes]
rs71537791	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71537792	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71547889	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71547892	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779786	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783286	1.00[ASN][1000 genomes]
rs7783364	1.00[ASN][1000 genomes]
rs7785482	1.00[ASN][1000 genomes]
rs7788437	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7793005	1.00[ASN][1000 genomes]
rs7803637	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv888007	chr7:48467581-48533508	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48511600-48554400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48520800-48536000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:48523800-48574000	Weak transcription	Primary hematopoietic stem cells	blood

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