Variant report

Variant	rs17134770
Chromosome Location	chr7:108282438-108282439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10237798	1.00[AMR][1000 genomes]
rs17156028	1.00[AMR][1000 genomes]
rs17156042	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17156047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57228227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58481793	1.00[AMR][1000 genomes]
rs60918562	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61206713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61434021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713192	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713194	0.80[AFR][1000 genomes]
rs73714705	1.00[AMR][1000 genomes]
rs73714709	1.00[AMR][1000 genomes]
rs73714715	1.00[AMR][1000 genomes]
rs73714722	1.00[AMR][1000 genomes]
rs73714724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17134770	SYCE1	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108282200-108282600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr7:108282200-108282800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:108282200-108282800	Enhancers	Fetal Lung	lung
4	chr7:108282200-108282800	Enhancers	Fetal Stomach	stomach
5	chr7:108282200-108283000	Enhancers	Adipose Nuclei	Adipose
6	chr7:108282400-108283600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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