Variant report

Variant	rs61206713
Chromosome Location	chr7:108291631-108291632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10237798	1.00[AMR][1000 genomes]
rs10268467	1.00[AMR][1000 genomes]
rs17134770	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17156028	1.00[AMR][1000 genomes]
rs17156042	1.00[AMR][1000 genomes]
rs17156047	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57228227	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58481793	1.00[AMR][1000 genomes]
rs60918562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61434021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713192	1.00[AMR][1000 genomes]
rs73713194	0.89[AFR][1000 genomes]
rs73714705	1.00[AMR][1000 genomes]
rs73714709	1.00[AMR][1000 genomes]
rs73714715	1.00[AMR][1000 genomes]
rs73714722	1.00[AMR][1000 genomes]
rs73714724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108288400-108291800	Enhancers	Fetal Stomach	stomach
2	chr7:108289800-108291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:108290200-108291800	Enhancers	Liver	Liver
4	chr7:108290400-108291800	Enhancers	A549	lung
5	chr7:108290600-108291800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:108290800-108291800	Weak transcription	Fetal Lung	lung
7	chr7:108291000-108294000	Weak transcription	Adipose Nuclei	Adipose
8	chr7:108291600-108291800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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