Variant report

Variant	rs60918562
Chromosome Location	chr7:108270534-108270535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10237798	1.00[AMR][1000 genomes]
rs17134770	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17156028	1.00[AMR][1000 genomes]
rs17156042	1.00[AMR][1000 genomes]
rs17156047	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57228227	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58481793	1.00[AMR][1000 genomes]
rs61206713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61434021	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713192	1.00[AMR][1000 genomes]
rs73714705	1.00[AMR][1000 genomes]
rs73714709	1.00[AMR][1000 genomes]
rs73714715	1.00[AMR][1000 genomes]
rs73714722	1.00[AMR][1000 genomes]
rs73714724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108257800-108270800	Weak transcription	Right Atrium	heart
2	chr7:108268800-108271800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:108269400-108271400	Enhancers	Fetal Brain Female	brain
4	chr7:108269400-108271800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:108269600-108271600	Enhancers	Fetal Stomach	stomach
6	chr7:108270000-108270800	Enhancers	Brain Germinal Matrix	brain
7	chr7:108270200-108272000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:108270400-108271000	Enhancers	Fetal Muscle Leg	muscle
9	chr7:108270400-108271800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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