Variant report

Variant	rs17134821
Chromosome Location	chr11:76104085-76104086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236739	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289946	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12289955	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12293827	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17134820	0.88[ASW][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs17134828	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2513504	0.83[JPT][hapmap]
rs2513525	0.83[JPT][hapmap]
rs61894463	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7927515	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17134821	GDPD5	cis	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76094200-76104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:76094400-76104400	Weak transcription	Gastric	stomach
5	chr11:76094600-76104600	Weak transcription	Lung	lung
6	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
7	chr11:76100400-76109000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:76101400-76104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:76101800-76104800	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:76102000-76104600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:76102600-76104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:76103200-76104800	Enhancers	Fetal Lung	lung
13	chr11:76103200-76105600	Weak transcription	Pancreas	Pancrea
14	chr11:76103400-76104800	Enhancers	Primary B cells from cord blood	blood
15	chr11:76103600-76104600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:76103800-76104600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:76104000-76104600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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