Variant report

Variant	rs17134820
Chromosome Location	chr11:76103445-76103446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf30-2	chr11:76103240-76103949	ENSG00000271757.1

Variant related genes	Relation type
ENSG00000179240	Chromatin interaction
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10160382	0.89[JPT][hapmap]
rs11236724	1.00[CEU][hapmap]
rs12271264	1.00[CEU][hapmap]
rs12288488	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12289109	0.92[EUR][1000 genomes]
rs12289955	0.81[ASW][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap]
rs12291710	1.00[CEU][hapmap]
rs12293837	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17134821	0.88[ASW][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs17134828	0.89[GIH][hapmap];0.90[MEX][hapmap]
rs2508744	0.83[CHB][hapmap]
rs3814712	1.00[CEU][hapmap]
rs56665967	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57965939	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60003482	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60193656	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7102664	1.00[CEU][hapmap]
rs7125625	1.00[CEU][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76094200-76104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:76094400-76103600	Weak transcription	Fetal Brain Female	brain
5	chr11:76094400-76104400	Weak transcription	Gastric	stomach
6	chr11:76094600-76104600	Weak transcription	Lung	lung
7	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
8	chr11:76100400-76109000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:76101400-76104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:76101800-76104800	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:76102000-76103600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:76102000-76104600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:76102600-76103800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:76102600-76104000	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:76102600-76104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:76103000-76103600	Enhancers	Small Intestine	intestine
17	chr11:76103000-76103600	Flanking Active TSS	HepG2	liver
18	chr11:76103200-76103800	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:76103200-76104800	Enhancers	Fetal Lung	lung
20	chr11:76103200-76105600	Weak transcription	Pancreas	Pancrea
21	chr11:76103400-76103600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:76103400-76104800	Enhancers	Primary B cells from cord blood	blood

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