Variant report

Variant	rs10160382
Chromosome Location	chr11:76127214-76127215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76118708..76120776-chr11:76127034..76129111,2	MCF-7	breast:
2	chr11:76092017..76093553-chr11:76126814..76128807,2	MCF-7	breast:
3	chr11:76127052..76127735-chr11:76483717..76484285,2	MCF-7	breast:
4	chr11:76124379..76127388-chr11:76154738..76157468,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000179240	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10793167	0.84[CEU][hapmap]
rs10793169	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs10793171	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs10899217	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899222	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899227	0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.92[ASN][1000 genomes]
rs17134820	0.89[JPT][hapmap]
rs17245270	0.89[EUR][1000 genomes]
rs17450692	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17749618	0.80[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs1939467	0.84[CEU][hapmap];0.83[GIH][hapmap]
rs1939468	0.80[CEU][hapmap];0.81[TSI][hapmap]
rs2282611	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs2508740	0.93[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes]
rs2508741	0.93[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes]
rs2508760	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs2508761	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs2508762	0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.92[ASN][1000 genomes]
rs2513508	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs2513513	0.88[MEX][hapmap];0.80[TSI][hapmap]
rs2513525	0.89[GIH][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap]
rs3753051	0.80[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs3814711	0.93[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4245443	0.83[MEX][hapmap];0.82[TSI][hapmap]
rs4272809	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs4300410	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs56393414	0.91[EUR][1000 genomes]
rs56394729	0.87[EUR][1000 genomes]
rs58015965	0.91[EUR][1000 genomes]
rs59168723	0.85[EUR][1000 genomes]
rs61894507	0.89[EUR][1000 genomes]
rs7107058	0.88[MEX][hapmap]
rs7107442	0.87[EUR][1000 genomes]
rs7116583	0.86[EUR][1000 genomes]
rs7123361	0.80[CEU][hapmap];0.81[GIH][hapmap];0.88[EUR][1000 genomes]
rs7125552	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs72930511	0.87[EUR][1000 genomes]
rs7926009	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs7927515	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7928373	0.87[EUR][1000 genomes]
rs7936656	0.87[EUR][1000 genomes]
rs7941790	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7942257	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7949258	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs7951867	0.84[EUR][1000 genomes]
rs8848	0.88[MEX][hapmap];0.82[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10160382	SLCO2B1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76127200-76127600	Enhancers	Skeletal Muscle Female	skeletal muscle

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