Variant report

Variant	rs59168723
Chromosome Location	chr11:76193970-76193971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76191502..76194293-chr11:76198687..76201522,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10160382	0.85[EUR][1000 genomes]
rs17245270	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17450692	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17749618	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939467	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1939468	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2282611	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3753051	0.93[ASN][1000 genomes]
rs55904328	0.90[ASN][1000 genomes]
rs55975198	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56159348	0.81[ASN][1000 genomes]
rs56294280	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56393414	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56394729	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58015965	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61894507	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61894512	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61894542	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894543	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894546	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7107442	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116583	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7123361	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7125552	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72930511	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928373	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936656	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7941790	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7942257	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7949258	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7951867	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76177400-76195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:76183800-76194400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:76184400-76235000	Weak transcription	NHEK	skin
8	chr11:76184800-76202600	Weak transcription	Aorta	Aorta
9	chr11:76185000-76204000	Weak transcription	Right Ventricle	heart
10	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
13	chr11:76190600-76207200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
15	chr11:76191000-76203800	Weak transcription	Colonic Mucosa	Colon
16	chr11:76191200-76202600	Weak transcription	HepG2	liver
17	chr11:76191400-76202600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:76191400-76203200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:76191400-76203600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:76191400-76204000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:76191400-76204600	Weak transcription	HSMMtube	muscle
22	chr11:76191400-76204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:76191400-76204800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:76191400-76205600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:76191400-76206600	Weak transcription	Fetal Brain Male	brain
26	chr11:76191400-76207000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:76191400-76211200	Weak transcription	NH-A	brain
28	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
30	chr11:76191400-76211400	Weak transcription	HMEC	breast
31	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
32	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:76191600-76199400	Weak transcription	Primary T cells from cord blood	blood
35	chr11:76191600-76201400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:76191600-76201600	Weak transcription	Stomach Mucosa	stomach
37	chr11:76191600-76201800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:76191600-76202400	Weak transcription	Brain Angular Gyrus	brain
39	chr11:76191600-76202400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:76191600-76202600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:76191600-76202800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:76191600-76202800	Weak transcription	K562	blood
43	chr11:76191600-76204000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:76191600-76204200	Weak transcription	NHLF	lung
45	chr11:76191600-76204400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:76191600-76204600	Weak transcription	A549	lung
47	chr11:76191600-76205000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:76191600-76207000	Weak transcription	HSMM	muscle
49	chr11:76191600-76207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:76191600-76207200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links