Variant report

Variant	rs7936656
Chromosome Location	chr11:76203671-76203672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76176649..76178412-chr11:76202103..76204664,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160382	0.87[EUR][1000 genomes]
rs17245270	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450692	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17749618	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939467	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939468	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282611	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3753051	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55904328	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55975198	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159348	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56294280	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393414	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56394729	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58015965	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59168723	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894507	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894512	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61894542	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894543	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894546	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107442	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115331	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7116583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123361	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125552	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930511	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927515	0.81[EUR][1000 genomes]
rs7928373	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941790	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942257	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949258	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951867	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:76184400-76235000	Weak transcription	NHEK	skin
6	chr11:76185000-76204000	Weak transcription	Right Ventricle	heart
7	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
10	chr11:76190600-76207200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
12	chr11:76191000-76203800	Weak transcription	Colonic Mucosa	Colon
13	chr11:76191400-76204000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:76191400-76204600	Weak transcription	HSMMtube	muscle
15	chr11:76191400-76204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:76191400-76204800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:76191400-76205600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:76191400-76206600	Weak transcription	Fetal Brain Male	brain
19	chr11:76191400-76207000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:76191400-76211200	Weak transcription	NH-A	brain
21	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
23	chr11:76191400-76211400	Weak transcription	HMEC	breast
24	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
25	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:76191600-76204000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:76191600-76204200	Weak transcription	NHLF	lung
29	chr11:76191600-76204400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:76191600-76204600	Weak transcription	A549	lung
31	chr11:76191600-76205000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:76191600-76207000	Weak transcription	HSMM	muscle
33	chr11:76191600-76207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:76191600-76207200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
36	chr11:76192000-76207200	Weak transcription	Osteobl	bone
37	chr11:76192200-76203800	Weak transcription	Pancreas	Pancrea
38	chr11:76192200-76207200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:76192600-76204400	Weak transcription	Brain Anterior Caudate	brain
40	chr11:76192600-76204600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:76192600-76205200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:76192600-76206600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:76192800-76207000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:76193000-76203800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:76193200-76203800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:76193600-76206400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:76193800-76204400	Weak transcription	Fetal Lung	lung
50	chr11:76193800-76207000	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links