Variant report

Variant	rs17245270
Chromosome Location	chr11:76157489-76157490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76090234..76093573-chr11:76154824..76158196,8	MCF-7	breast:
2	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:
3	chr11:76090615..76095251-chr11:76152894..76157527,10	K562	blood:

Variant related genes	Relation type
ENSG00000179240	Chromatin interaction
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160382	0.89[EUR][1000 genomes]
rs17450692	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17749618	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939467	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939468	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282611	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3753051	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55904328	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55975198	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159348	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56294280	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393414	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56394729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58015965	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59168723	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894512	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61894542	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894543	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894546	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107442	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115331	0.81[EUR][1000 genomes]
rs7116583	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125552	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930511	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927515	0.83[EUR][1000 genomes]
rs7928373	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936656	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941790	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949258	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951867	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76153800-76158800	Active TSS	GM12878-XiMat	blood
2	chr11:76154000-76157600	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:76154000-76157600	Active TSS	K562	blood
4	chr11:76154200-76157600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr11:76154200-76157600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:76154200-76157600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:76154200-76157800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:76154200-76158000	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:76154400-76157600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:76154600-76157800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:76154800-76157600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:76154800-76157600	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr11:76154800-76157800	Active TSS	A549	lung
14	chr11:76155000-76157600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:76155000-76157600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:76155000-76157600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:76155000-76157600	Active TSS	Hela-S3	cervix
18	chr11:76155000-76157800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:76155000-76157800	Active TSS	Fetal Brain Female	brain
20	chr11:76155000-76158000	Active TSS	Muscle Satellite Cultured Cells	--
21	chr11:76155200-76157800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:76156400-76157600	Active TSS	HepG2	liver
23	chr11:76156400-76157800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:76156600-76157800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:76156600-76157800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:76156800-76157800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr11:76157000-76157800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76157000-76157800	Flanking Active TSS	Dnd41	blood
29	chr11:76157000-76166400	Weak transcription	Small Intestine	intestine
30	chr11:76157200-76157600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:76157200-76157600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr11:76157200-76157600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:76157200-76157600	Enhancers	Brain Substantia Nigra	brain
34	chr11:76157200-76157800	Enhancers	Primary B cells from peripheral blood	blood
35	chr11:76157200-76157800	Enhancers	Liver	Liver
36	chr11:76157200-76158000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:76157200-76158000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:76157200-76158000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr11:76157200-76158000	Enhancers	Fetal Heart	heart
40	chr11:76157200-76158200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:76157200-76158200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr11:76157200-76158200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr11:76157200-76158200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:76157200-76159400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:76157200-76161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:76157200-76161600	Weak transcription	Lung	lung
47	chr11:76157200-76166400	Weak transcription	Ovary	ovary
48	chr11:76157200-76168400	Weak transcription	Psoas Muscle	Psoas
49	chr11:76157200-76183400	Weak transcription	Gastric	stomach
50	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links