Variant report

Variant	rs7942257
Chromosome Location	chr11:76179547-76179548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76173540..76176471-chr11:76178229..76181112,2	K562	blood:
2	chr11:76154568..76158629-chr11:76178125..76181479,4	K562	blood:
3	chr11:76177261..76180116-chr11:76185767..76188611,2	MCF-7	breast:
4	chr11:76178422..76180245-chr11:76180873..76183428,2	K562	blood:
5	chr11:76178745..76180889-chr11:76180922..76183428,2	K562	blood:
6	chr11:76154568..76158629-chr11:76177226..76180537,4	K562	blood:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10160382	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10793169	0.85[CEU][hapmap]
rs10793171	0.85[CEU][hapmap]
rs10899227	0.82[CEU][hapmap]
rs17245270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450692	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17749618	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939467	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939468	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282611	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2508740	0.81[CEU][hapmap]
rs2508741	0.81[CEU][hapmap]
rs2508760	0.81[CEU][hapmap]
rs2508761	0.81[CEU][hapmap]
rs2508762	0.81[CEU][hapmap]
rs2513508	0.81[CEU][hapmap]
rs2513520	0.82[CEU][hapmap]
rs3753051	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3814711	0.85[CEU][hapmap]
rs4245443	0.81[CEU][hapmap]
rs4272809	0.81[CEU][hapmap]
rs4300410	0.81[CEU][hapmap]
rs4945090	0.82[CEU][hapmap]
rs55904328	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55975198	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159348	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56294280	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393414	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56394729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58015965	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59168723	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894512	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61894542	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894543	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894546	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107058	0.81[CEU][hapmap]
rs7107442	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115331	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7116583	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123361	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125552	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930511	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926009	0.81[CEU][hapmap]
rs7927515	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7928373	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936656	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941790	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7949258	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951867	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157200-76183400	Weak transcription	Gastric	stomach
2	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
4	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
7	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
8	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
9	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
11	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
12	chr11:76158000-76181000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:76159800-76190400	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:76162200-76183600	Weak transcription	Lung	lung
16	chr11:76164400-76182400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:76164400-76183600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:76164600-76182800	Weak transcription	Fetal Brain Male	brain
19	chr11:76164800-76188600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:76165600-76183400	Weak transcription	Aorta	Aorta
21	chr11:76165600-76183400	Weak transcription	Pancreas	Pancrea
22	chr11:76166800-76183600	Weak transcription	Osteobl	bone
23	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
24	chr11:76167000-76183800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:76167200-76190200	Weak transcription	NHLF	lung
26	chr11:76167800-76192000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:76168600-76187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
29	chr11:76169200-76180400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:76169800-76182800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:76170400-76180800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:76170400-76182600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:76170600-76182200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:76170600-76183600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:76171400-76179800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:76171400-76183400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:76171400-76183600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:76171400-76183600	Weak transcription	NHEK	skin
40	chr11:76171400-76190200	Weak transcription	Fetal Heart	heart
41	chr11:76172000-76183600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:76172400-76187800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:76172600-76179800	Weak transcription	Fetal Intestine Small	intestine
44	chr11:76172800-76183600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:76173200-76187000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:76173400-76180400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:76173400-76181000	Strong transcription	Dnd41	blood
48	chr11:76173400-76181200	Strong transcription	Adipose Nuclei	Adipose
49	chr11:76173400-76187200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:76173400-76188000	Strong transcription	Primary B cells from cord blood	blood

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