Variant report
| Variant | rs7927515 |
|---|---|
| Chromosome Location | chr11:76125330-76125331 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-111M22.2.1-1 | chr11:76121906-76125663 | NONHSAT023165 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000158636 | Chromatin interaction |
| ENSG00000255135 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10160382 | 1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10793167 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs10899217 | 0.82[AMR][1000 genomes] |
| rs10899227 | 0.80[YRI][hapmap] |
| rs11236739 | 0.92[JPT][hapmap] |
| rs11236749 | 0.80[EUR][1000 genomes] |
| rs11236752 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12289955 | 0.82[JPT][hapmap] |
| rs17134821 | 1.00[JPT][hapmap] |
| rs17134828 | 1.00[JPT][hapmap] |
| rs17245270 | 0.83[EUR][1000 genomes] |
| rs17450692 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs17749618 | 0.80[CEU][hapmap] |
| rs1939467 | 0.84[CEU][hapmap] |
| rs1939468 | 0.80[CEU][hapmap] |
| rs2282611 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs2513504 | 0.90[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap] |
| rs2513525 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs3753051 | 0.80[CEU][hapmap] |
| rs3814711 | 0.80[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs56393414 | 0.85[EUR][1000 genomes] |
| rs56394729 | 0.82[EUR][1000 genomes] |
| rs58015965 | 0.85[EUR][1000 genomes] |
| rs61894507 | 0.83[EUR][1000 genomes] |
| rs7107442 | 0.82[EUR][1000 genomes] |
| rs7116583 | 0.80[EUR][1000 genomes] |
| rs7123361 | 0.80[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs7125552 | 0.85[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs72930511 | 0.81[EUR][1000 genomes] |
| rs7928373 | 0.81[EUR][1000 genomes] |
| rs7936656 | 0.81[EUR][1000 genomes] |
| rs7941790 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs7942257 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs7949258 | 0.84[CEU][hapmap];0.82[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
