Variant report

Variant	rs7949258
Chromosome Location	chr11:76186668-76186669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76185002..76188138-chr11:76188501..76191147,3	K562	blood:
2	chr11:76177261..76180116-chr11:76185767..76188611,2	MCF-7	breast:
3	chr11:76182591..76185058-chr11:76186358..76187920,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10160382	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs10793169	0.88[CEU][hapmap]
rs10793171	0.88[CEU][hapmap]
rs10899227	0.85[CEU][hapmap]
rs17245270	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450692	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17749618	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939468	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282611	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2508740	0.85[CEU][hapmap]
rs2508741	0.84[CEU][hapmap]
rs2508760	0.85[CEU][hapmap]
rs2508761	0.85[CEU][hapmap]
rs2508762	0.85[CEU][hapmap]
rs2513504	0.82[CEU][hapmap]
rs2513508	0.85[CEU][hapmap]
rs2513513	0.81[CEU][hapmap]
rs2513520	0.85[CEU][hapmap]
rs2513525	0.81[CEU][hapmap]
rs3753051	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3814711	0.81[CEU][hapmap]
rs4245443	0.85[CEU][hapmap]
rs4272809	0.85[CEU][hapmap]
rs4300410	0.85[CEU][hapmap]
rs4945090	0.85[CEU][hapmap]
rs55904328	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55975198	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159348	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56294280	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393414	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56394729	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58015965	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59168723	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894507	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894512	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61894542	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894543	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894546	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107058	0.84[CEU][hapmap]
rs7107442	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115331	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7116583	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123361	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930511	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926009	0.85[CEU][hapmap]
rs7927515	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7928373	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936656	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941790	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942257	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951867	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8848	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
3	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
4	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:76159800-76190400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:76164800-76188600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
8	chr11:76167200-76190200	Weak transcription	NHLF	lung
9	chr11:76167800-76192000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:76168600-76187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
12	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:76171400-76190200	Weak transcription	Fetal Heart	heart
14	chr11:76172400-76187800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:76173200-76187000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:76173400-76187200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:76173400-76188000	Strong transcription	Primary B cells from cord blood	blood
18	chr11:76173400-76191400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr11:76173400-76191600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:76173600-76191600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:76173800-76190000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:76174800-76187000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:76174800-76188000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:76174800-76191400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:76175200-76190200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:76175400-76190400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:76175800-76190200	Weak transcription	Brain Substantia Nigra	brain
28	chr11:76177200-76187600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:76177400-76195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:76178000-76187800	Weak transcription	K562	blood
31	chr11:76178000-76190200	Weak transcription	A549	lung
32	chr11:76179600-76187600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:76180400-76191000	Weak transcription	HSMMtube	muscle
35	chr11:76181600-76187000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:76181600-76187400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:76182000-76187800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:76182200-76187000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:76182200-76187400	Strong transcription	Placenta	Placenta
40	chr11:76182200-76188000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:76182400-76187200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:76182400-76187600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:76182400-76187800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:76182400-76189200	Strong transcription	Brain Germinal Matrix	brain
45	chr11:76182600-76187400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:76182600-76187400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr11:76182600-76187800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:76182600-76187800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:76182600-76187800	Strong transcription	Fetal Thymus	thymus
50	chr11:76182600-76188200	Strong transcription	Dnd41	blood

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