Variant report

Variant	rs7125552
Chromosome Location	chr11:76211094-76211095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76210981..76212652-chr11:76215333..76217549,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10160382	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10793169	0.88[CEU][hapmap]
rs10793171	0.88[CEU][hapmap]
rs10899227	0.85[CEU][hapmap]
rs17245270	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450692	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17749618	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939468	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282611	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2508740	0.85[CEU][hapmap]
rs2508741	0.84[CEU][hapmap]
rs2508760	0.85[CEU][hapmap]
rs2508761	0.85[CEU][hapmap]
rs2508762	0.85[CEU][hapmap]
rs2513504	0.82[CEU][hapmap]
rs2513508	0.85[CEU][hapmap]
rs2513513	0.81[CEU][hapmap]
rs2513520	0.86[CEU][hapmap]
rs2513525	0.81[CEU][hapmap]
rs3753051	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3814711	0.81[CEU][hapmap]
rs4245443	0.85[CEU][hapmap]
rs4272809	0.85[CEU][hapmap]
rs4300410	0.85[CEU][hapmap]
rs4945090	0.86[CEU][hapmap]
rs55904328	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55975198	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159348	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56294280	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393414	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56394729	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58015965	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59168723	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894507	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61894512	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61894542	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894543	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61894546	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107058	0.84[CEU][hapmap]
rs7107442	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115331	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7116583	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123361	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926009	0.85[CEU][hapmap]
rs7927515	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7928373	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936656	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941790	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942257	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8848	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76184400-76235000	Weak transcription	NHEK	skin
5	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
8	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
9	chr11:76191400-76211200	Weak transcription	NH-A	brain
10	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
12	chr11:76191400-76211400	Weak transcription	HMEC	breast
13	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
14	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
17	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:76201400-76212800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:76203200-76211400	Weak transcription	K562	blood
21	chr11:76204000-76221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:76205200-76211400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:76205200-76211400	Weak transcription	A549	lung
24	chr11:76205200-76211600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:76205200-76213000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:76205200-76234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:76205200-76235800	Weak transcription	NHLF	lung
28	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
29	chr11:76205400-76211400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:76205400-76211800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:76205400-76221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:76205400-76227000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:76205400-76235800	Weak transcription	Lung	lung
34	chr11:76205400-76240000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
36	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:76205600-76211600	Weak transcription	HSMMtube	muscle
38	chr11:76205600-76221200	Weak transcription	Pancreas	Pancrea
39	chr11:76205600-76239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:76205800-76211400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:76205800-76211400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:76205800-76211400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:76205800-76211400	Weak transcription	Adipose Nuclei	Adipose
44	chr11:76205800-76221200	Weak transcription	Ovary	ovary
45	chr11:76205800-76235800	Weak transcription	Esophagus	oesophagus
46	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon
47	chr11:76206200-76212000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr11:76206400-76212000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:76206800-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:76207000-76211400	Strong transcription	Dnd41	blood

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