Variant report

Variant	rs72930511
Chromosome Location	chr11:76207709-76207710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76154766..76157535-chr11:76206262..76208406,2	K562	blood:
2	chr11:76206276..76208160-chr11:76208743..76210293,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160382	0.87[EUR][1000 genomes]
rs17245270	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17450692	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17749618	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939467	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1939468	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2282611	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3753051	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55904328	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55975198	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56159348	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56294280	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56393414	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56394729	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58015965	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59168723	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61894507	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61894512	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61894542	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894543	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894546	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7107442	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7115331	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7116583	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7123361	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7125552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927515	0.81[EUR][1000 genomes]
rs7928373	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936656	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7941790	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7942257	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7949258	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7951867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76184400-76235000	Weak transcription	NHEK	skin
5	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
8	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
9	chr11:76191400-76211200	Weak transcription	NH-A	brain
10	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
12	chr11:76191400-76211400	Weak transcription	HMEC	breast
13	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
14	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
17	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:76199000-76210600	Weak transcription	GM12878-XiMat	blood
20	chr11:76201000-76208200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:76201400-76212800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:76202200-76210200	Strong transcription	Placenta	Placenta
23	chr11:76202400-76210200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:76203200-76211400	Weak transcription	K562	blood
25	chr11:76203600-76208000	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:76204000-76221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:76204400-76208400	Strong transcription	Fetal Lung	lung
28	chr11:76205200-76211400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:76205200-76211400	Weak transcription	A549	lung
30	chr11:76205200-76211600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:76205200-76213000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:76205200-76234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:76205200-76235800	Weak transcription	NHLF	lung
34	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
35	chr11:76205400-76207800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:76205400-76210800	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:76205400-76210800	Weak transcription	Fetal Stomach	stomach
38	chr11:76205400-76210800	Weak transcription	Spleen	Spleen
39	chr11:76205400-76211400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:76205400-76211800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:76205400-76221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:76205400-76227000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:76205400-76235800	Weak transcription	Lung	lung
44	chr11:76205400-76240000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
46	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:76205600-76210200	Weak transcription	Fetal Intestine Small	intestine
48	chr11:76205600-76211600	Weak transcription	HSMMtube	muscle
49	chr11:76205600-76221200	Weak transcription	Pancreas	Pancrea
50	chr11:76205600-76239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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