Variant report

Variant	rs11236724
Chromosome Location	chr11:76056456-76056457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76055513..76058854-chr11:76089772..76093547,5	MCF-7	breast:
2	chr11:76051537..76054007-chr11:76054724..76057312,2	K562	blood:
3	chr11:76054481..76057332-chr11:76090389..76092075,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179240	Chromatin interaction
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12270671	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272118	0.80[EUR][1000 genomes]
rs12281889	0.91[MKK][hapmap]
rs12291710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576140	0.80[AMR][1000 genomes]
rs12576436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577885	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134820	1.00[CEU][hapmap]
rs2156714	0.80[AMR][1000 genomes]
rs3814712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59406877	0.80[EUR][1000 genomes]
rs59877552	0.80[EUR][1000 genomes]
rs61685496	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112778	0.80[AMR][1000 genomes]
rs7112895	0.80[AMR][1000 genomes]
rs7125625	1.00[CEU][hapmap]
rs7127263	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76048000-76060000	Weak transcription	Spleen	Spleen
2	chr11:76048000-76061400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:76048000-76064800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:76048200-76064000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:76048400-76061800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76048600-76059800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:76050000-76064600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:76050400-76060000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:76050400-76060000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:76050400-76060400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:76050400-76060400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:76050400-76064000	Weak transcription	Fetal Stomach	stomach
13	chr11:76050400-76064200	Weak transcription	Left Ventricle	heart
14	chr11:76050400-76064200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:76050400-76064200	Weak transcription	Thymus	Thymus
16	chr11:76050400-76064200	Weak transcription	NHLF	lung
17	chr11:76050400-76065000	Weak transcription	Colonic Mucosa	Colon
18	chr11:76050600-76059600	Weak transcription	Primary B cells from cord blood	blood
19	chr11:76050600-76060000	Weak transcription	Placenta	Placenta
20	chr11:76050600-76064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:76050600-76064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:76050800-76059000	Weak transcription	Liver	Liver
23	chr11:76050800-76059800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:76050800-76063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:76050800-76063800	Weak transcription	Osteobl	bone
26	chr11:76050800-76064200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:76051000-76060000	Weak transcription	Fetal Thymus	thymus
28	chr11:76051000-76063800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:76051000-76064200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:76051000-76064400	Weak transcription	Aorta	Aorta
31	chr11:76051200-76056800	Weak transcription	Lung	lung
32	chr11:76051200-76059800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:76051200-76059800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:76051200-76061600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:76051200-76065000	Weak transcription	Gastric	stomach
36	chr11:76051200-76065200	Weak transcription	Right Ventricle	heart
37	chr11:76051200-76066200	Weak transcription	NHDF-Ad	bronchial
38	chr11:76051400-76056800	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:76051400-76059400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:76051400-76059400	Weak transcription	Adipose Nuclei	Adipose
41	chr11:76051400-76060000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:76051400-76063800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:76052200-76058200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:76052200-76058400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:76052600-76060000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:76052600-76065200	Weak transcription	HSMM	muscle
47	chr11:76052800-76063800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:76053200-76058600	Weak transcription	Brain Substantia Nigra	brain
49	chr11:76053200-76064200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:76053600-76059000	Weak transcription	Primary T cells from cord blood	blood

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