Variant report

Variant	rs7112778
Chromosome Location	chr11:76030313-76030314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75578959..75579490-chr11:76029607..76030437,2	MCF-7	breast:
2	chr11:75919537..75920594-chr11:76028825..76030444,6	MCF-7	breast:
3	chr11:76029598..76030351-chr3:64009140..64009722,2	MCF-7	breast:
4	chr11:75918322..75919263-chr11:76029385..76030419,7	MCF-7	breast:
5	chr11:75918335..75919414-chr11:76029518..76030460,11	K562	blood:
6	chr11:75919338..75920436-chr11:76029517..76030609,7	MCF-7	breast:
7	chr11:76030099..76031933-chr11:76048238..76050183,2	K562	blood:
8	chr11:76025405..76027275-chr11:76028551..76031168,2	MCF-7	breast:
9	chr11:75607508..75608561-chr11:76029521..76030484,5	K562	blood:
10	chr11:75918736..75920705-chr11:76028307..76032444,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11236724	0.80[AMR][1000 genomes]
rs12270671	0.85[AMR][1000 genomes]
rs12271264	0.85[AMR][1000 genomes]
rs12291710	0.85[AMR][1000 genomes]
rs12573970	0.80[AMR][1000 genomes]
rs12575838	0.80[AMR][1000 genomes]
rs12576140	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576436	0.80[AMR][1000 genomes]
rs12577750	0.80[AMR][1000 genomes]
rs12577885	0.80[AMR][1000 genomes]
rs12578040	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2156714	1.00[AMR][1000 genomes]
rs3814712	0.80[AMR][1000 genomes]
rs61685496	0.85[AMR][1000 genomes]
rs7112895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118334	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946197	1.00[EUR][1000 genomes]
rs7946578	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv989053	chr11:76027846-76039082	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76025800-76031200	Weak transcription	Placenta	Placenta
2	chr11:76027000-76032800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:76028400-76030600	Enhancers	Pancreas	Pancrea
4	chr11:76028800-76033400	Weak transcription	Hela-S3	cervix
5	chr11:76029800-76032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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