Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:76018771..76021180-chr11:76023775..76026508,2	MCF-7	breast:
2	chr11:75949102..75951865-chr11:76018833..76020777,2	MCF-7	breast:
3	chr11:76013386..76015934-chr11:76018875..76020881,3	K562	blood:

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11236724	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12270671	0.81[AMR][1000 genomes]
rs12271264	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs12291710	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12576140	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12578040	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17134820	1.00[CEU][hapmap]
rs2156714	0.86[AMR][1000 genomes]
rs3814712	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs61685496	0.81[AMR][1000 genomes]
rs7102664	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7112778	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112895	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127263	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7946197	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7946578	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76016400-76019600	Enhancers	Fetal Muscle Leg	muscle
2	chr11:76016600-76020000	Enhancers	Fetal Lung	lung
3	chr11:76017800-76019400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:76018000-76019600	Enhancers	Adipose Nuclei	Adipose
5	chr11:76018200-76019200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76018200-76019200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:76018200-76019800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:76018400-76019400	Enhancers	Fetal Brain Male	brain
9	chr11:76018400-76019600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:76018400-76019600	Enhancers	Brain Germinal Matrix	brain
11	chr11:76018400-76019800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:76018400-76020600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:76018600-76022800	Weak transcription	Fetal Brain Female	brain
14	chr11:76018800-76019200	Weak transcription	Right Atrium	heart
15	chr11:76018800-76019400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:76018800-76019600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:76019000-76019400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr11:76019000-76019400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:76019000-76019600	Enhancers	Fetal Intestine Small	intestine
20	chr11:76019000-76019800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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