Variant report

Variant	rs12576436
Chromosome Location	chr11:76067595-76067596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76067003..76068670-chr11:76071732..76073278,2	K562	blood:
2	chr11:76064413..76068190-chr11:76071048..76073540,4	MCF-7	breast:
3	chr11:76063211..76065578-chr11:76066828..76069387,3	K562	blood:
4	chr11:76066083..76068514-chr11:76079264..76081458,2	K562	blood:
5	chr11:76063211..76065578-chr11:76066978..76069387,2	K562	blood:

Variant related genes	Relation type
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11236724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270671	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271264	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272118	0.80[EUR][1000 genomes]
rs12291710	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576140	0.80[AMR][1000 genomes]
rs12577750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577885	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156714	0.80[AMR][1000 genomes]
rs3814712	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59406877	0.80[EUR][1000 genomes]
rs59877552	0.80[EUR][1000 genomes]
rs61685496	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102664	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112778	0.80[AMR][1000 genomes]
rs7112895	0.80[AMR][1000 genomes]
rs7127263	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
2	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
3	chr11:76058800-76071400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:76059000-76082000	Weak transcription	HMEC	breast
5	chr11:76060200-76069000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:76061600-76067800	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:76062600-76079200	Weak transcription	Stomach Mucosa	stomach
8	chr11:76062800-76068400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:76063000-76069400	Weak transcription	Fetal Brain Male	brain
10	chr11:76063000-76077000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:76063600-76068800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:76063800-76067800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:76063800-76067800	Strong transcription	Osteobl	bone
14	chr11:76063800-76068400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:76064000-76067600	Strong transcription	Fetal Muscle Leg	muscle
16	chr11:76064000-76067600	ZNF genes & repeats	GM12878-XiMat	blood
17	chr11:76064000-76067600	Strong transcription	NHEK	skin
18	chr11:76064000-76067800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:76064000-76067800	Strong transcription	Adipose Nuclei	Adipose
20	chr11:76064000-76067800	Strong transcription	Liver	Liver
21	chr11:76064000-76068000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:76064000-76068000	Strong transcription	Fetal Stomach	stomach
23	chr11:76064000-76068400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:76064000-76068600	Strong transcription	Fetal Thymus	thymus
25	chr11:76064200-76067600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:76064200-76067600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr11:76064200-76067600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76064200-76067600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:76064200-76068000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:76064400-76067600	ZNF genes & repeats	Primary B cells from cord blood	blood
31	chr11:76064400-76067600	Strong transcription	Aorta	Aorta
32	chr11:76064400-76067600	Strong transcription	Fetal Lung	lung
33	chr11:76064400-76068200	Strong transcription	HUVEC	blood vessel
34	chr11:76064600-76067600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:76064600-76067600	Strong transcription	Rectal Smooth Muscle	rectum
36	chr11:76064800-76067800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:76064800-76068200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:76064800-76072400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:76065000-76067600	Strong transcription	Gastric	stomach
40	chr11:76065000-76067600	ZNF genes & repeats	Dnd41	blood
41	chr11:76065200-76067600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:76065200-76067800	Strong transcription	Colonic Mucosa	Colon
43	chr11:76065400-76067800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:76065600-76067800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:76065600-76067800	Strong transcription	Fetal Kidney	kidney
46	chr11:76065600-76067800	Strong transcription	Placenta	Placenta
47	chr11:76065600-76069400	Strong transcription	HSMM	muscle
48	chr11:76065800-76067600	Enhancers	Brain Angular Gyrus	brain
49	chr11:76065800-76067600	Strong transcription	Colon Smooth Muscle	Colon
50	chr11:76065800-76067600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links