Variant report

Variant	rs12575838
Chromosome Location	chr11:76060284-76060285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76054270..76056421-chr11:76059241..76061034,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11236724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270671	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272118	0.80[EUR][1000 genomes]
rs12291710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576140	0.80[AMR][1000 genomes]
rs12576436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577885	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134820	1.00[CEU][hapmap]
rs2156714	0.80[AMR][1000 genomes]
rs3814712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59406877	0.80[EUR][1000 genomes]
rs59877552	0.80[EUR][1000 genomes]
rs61685496	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112778	0.80[AMR][1000 genomes]
rs7112895	0.80[AMR][1000 genomes]
rs7125625	1.00[CEU][hapmap]
rs7127263	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76048000-76061400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:76048000-76064800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:76048200-76064000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:76048400-76061800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:76050000-76064600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:76050400-76060400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:76050400-76060400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:76050400-76064000	Weak transcription	Fetal Stomach	stomach
9	chr11:76050400-76064200	Weak transcription	Left Ventricle	heart
10	chr11:76050400-76064200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:76050400-76064200	Weak transcription	Thymus	Thymus
12	chr11:76050400-76064200	Weak transcription	NHLF	lung
13	chr11:76050400-76065000	Weak transcription	Colonic Mucosa	Colon
14	chr11:76050600-76064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:76050600-76064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:76050800-76063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:76050800-76063800	Weak transcription	Osteobl	bone
18	chr11:76050800-76064200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:76051000-76063800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:76051000-76064200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:76051000-76064400	Weak transcription	Aorta	Aorta
22	chr11:76051200-76061600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:76051200-76065000	Weak transcription	Gastric	stomach
24	chr11:76051200-76065200	Weak transcription	Right Ventricle	heart
25	chr11:76051200-76066200	Weak transcription	NHDF-Ad	bronchial
26	chr11:76051400-76063800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:76052600-76065200	Weak transcription	HSMM	muscle
28	chr11:76052800-76063800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:76053200-76064200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:76054000-76063800	Weak transcription	Hela-S3	cervix
31	chr11:76054200-76064200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:76054600-76065600	Weak transcription	Fetal Kidney	kidney
33	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
34	chr11:76055200-76064600	Weak transcription	Fetal Brain Female	brain
35	chr11:76055400-76063800	Weak transcription	A549	lung
36	chr11:76055400-76064200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:76055400-76064400	Weak transcription	Fetal Intestine Small	intestine
38	chr11:76055400-76065200	Weak transcription	HepG2	liver
39	chr11:76056800-76065000	Weak transcription	Esophagus	oesophagus
40	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
41	chr11:76057000-76063800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:76057200-76063800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:76057400-76065000	Weak transcription	Lung	lung
44	chr11:76057800-76064000	Weak transcription	NHEK	skin
45	chr11:76058200-76060600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:76058200-76064000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:76058200-76064800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:76058400-76064600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:76058600-76061600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:76058600-76064000	Weak transcription	Fetal Intestine Large	intestine

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