Variant report

Variant	rs17135665
Chromosome Location	chr11:77147908-77147909
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10899366	0.82[JPT][hapmap]
rs10899367	0.86[JPT][hapmap]
rs11237200	1.00[CEU][hapmap]
rs11820118	1.00[CEU][hapmap]
rs11828786	1.00[CEU][hapmap]
rs12420360	1.00[CEU][hapmap]
rs2156863	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs2602471	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2602473	1.00[CEU][hapmap]
rs2602474	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2602475	1.00[CEU][hapmap]
rs2602480	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs2602481	1.00[TSI][hapmap]
rs2725829	1.00[CEU][hapmap]
rs2729756	1.00[CEU][hapmap]
rs2729758	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs2729772	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs2729775	1.00[CEU][hapmap]
rs2844327	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2852388	1.00[CEU][hapmap]
rs2852390	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2852391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2853085	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2853089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2853094	0.82[JPT][hapmap]
rs2853095	1.00[CEU][hapmap]
rs2853098	1.00[CEU][hapmap]
rs2888377	1.00[CEU][hapmap]
rs733358	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs876319	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs947810	1.00[CEU][hapmap]
rs9634030	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77135400-77149000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:77141600-77148600	Weak transcription	Ovary	ovary
3	chr11:77142200-77164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:77142400-77151600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:77142800-77156200	Weak transcription	Gastric	stomach
6	chr11:77145600-77148000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:77146800-77148000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:77146800-77148000	Flanking Active TSS	GM12878-XiMat	blood
9	chr11:77147000-77148000	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr11:77147000-77148000	Enhancers	Fetal Lung	lung
11	chr11:77147000-77148200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:77147000-77148200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:77147000-77148200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:77147000-77148800	Enhancers	Fetal Intestine Large	intestine
15	chr11:77147000-77149000	Enhancers	Fetal Intestine Small	intestine
16	chr11:77147000-77149200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:77147000-77149200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:77147000-77150400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:77147200-77149000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:77147200-77149200	Enhancers	Pancreas	Pancrea
21	chr11:77147200-77149200	Enhancers	Small Intestine	intestine
22	chr11:77147200-77160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:77147200-77160800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:77147400-77149000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:77147400-77149400	Enhancers	Stomach Mucosa	stomach
26	chr11:77147600-77148000	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr11:77147600-77148200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr11:77147800-77148000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:77147800-77148000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:77147800-77148000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:77147800-77148000	Enhancers	Fetal Thymus	thymus
32	chr11:77147800-77148000	Enhancers	Thymus	Thymus
33	chr11:77147800-77149200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:77147800-77149200	Enhancers	Psoas Muscle	Psoas
35	chr11:77147800-77150800	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links