Variant report

Variant	rs17135898
Chromosome Location	chr7:102532225-102532226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102522158..102525265-chr7:102531503..102535074,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239162	1.00[EUR][1000 genomes]
rs10487282	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11557393	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135892	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135896	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17136074	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17136084	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17136087	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17136100	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17136106	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17136118	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17136121	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17136125	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17136131	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2228687	1.00[JPT][hapmap]
rs2411057	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41438745	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs61047356	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6963884	1.00[MEX][hapmap]
rs7810924	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs917332	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs917333	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv5880	chr7:102505158-102550471	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517000-102549600	Weak transcription	Gastric	stomach
2	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:102522600-102549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102528600-102534000	Enhancers	HUVEC	blood vessel
5	chr7:102529000-102535600	Weak transcription	Right Atrium	heart
6	chr7:102529600-102533200	Enhancers	A549	lung
7	chr7:102529600-102533600	Enhancers	NHLF	lung
8	chr7:102530200-102532600	Enhancers	Fetal Stomach	stomach
9	chr7:102530200-102533600	Enhancers	Colon Smooth Muscle	Colon
10	chr7:102530200-102533600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr7:102530200-102535000	Enhancers	HSMM	muscle
12	chr7:102530400-102532800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr7:102530400-102533200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr7:102530400-102533800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:102530400-102533800	Enhancers	NH-A	brain
16	chr7:102530400-102534800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr7:102530400-102534800	Enhancers	Osteobl	bone
18	chr7:102530400-102535400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:102530600-102532400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:102530600-102533800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:102530800-102532400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:102530800-102532400	Enhancers	Fetal Kidney	kidney
23	chr7:102530800-102532400	Enhancers	Fetal Muscle Leg	muscle
24	chr7:102530800-102532400	Enhancers	Left Ventricle	heart
25	chr7:102530800-102532400	Enhancers	Stomach Smooth Muscle	stomach
26	chr7:102530800-102532600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr7:102530800-102532600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:102530800-102532600	Enhancers	Rectal Smooth Muscle	rectum
29	chr7:102530800-102532600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr7:102530800-102533600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:102530800-102533600	Enhancers	Adipose Nuclei	Adipose
32	chr7:102530800-102533600	Enhancers	HMEC	breast
33	chr7:102530800-102534000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:102530800-102534000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:102530800-102535000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:102531000-102532400	Enhancers	Brain Angular Gyrus	brain
37	chr7:102531000-102532800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:102531000-102533800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:102531000-102534800	Enhancers	NHEK	skin
40	chr7:102531200-102532400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr7:102531200-102533600	Enhancers	Fetal Lung	lung
42	chr7:102531400-102532600	Enhancers	K562	blood
43	chr7:102531400-102532800	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr7:102531600-102532400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr7:102531600-102532400	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr7:102531800-102532400	Enhancers	Stomach Mucosa	stomach
47	chr7:102531800-102532600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:102531800-102532600	Enhancers	Aorta	Aorta
49	chr7:102531800-102532600	Enhancers	Hela-S3	cervix
50	chr7:102531800-102532600	Flanking Active TSS	NHDF-Ad	bronchial

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