Variant report

Variant	rs61047356
Chromosome Location	chr7:102568609-102568610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102568377..102571452-chr7:102572931..102576116,3	K562	blood:

Variant related genes	Relation type
ENSG00000128606	Chromatin interaction
ENSG00000161040	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10487282	1.00[EUR][1000 genomes]
rs11557393	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17135892	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17135896	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17135898	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17135912	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17136074	1.00[EUR][1000 genomes]
rs17136084	1.00[EUR][1000 genomes]
rs17136087	1.00[EUR][1000 genomes]
rs17136100	1.00[EUR][1000 genomes]
rs17136106	1.00[EUR][1000 genomes]
rs17136118	1.00[EUR][1000 genomes]
rs17136121	1.00[EUR][1000 genomes]
rs17136125	1.00[EUR][1000 genomes]
rs17136131	1.00[EUR][1000 genomes]
rs2228687	0.85[ASN][1000 genomes]
rs2411057	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6465886	0.82[ASN][1000 genomes]
rs66712128	0.91[ASN][1000 genomes]
rs7798582	0.91[ASN][1000 genomes]
rs917332	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs917333	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs979936	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102565200-102569200	Enhancers	Fetal Lung	lung
3	chr7:102565800-102569800	Genic enhancers	HSMM	muscle
4	chr7:102566200-102568800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:102566600-102568800	Enhancers	Brain Germinal Matrix	brain
6	chr7:102566600-102569400	Weak transcription	Psoas Muscle	Psoas
7	chr7:102566800-102568800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:102566800-102573000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:102567200-102573200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:102567600-102573000	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:102567600-102573600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:102567600-102574000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:102567800-102573800	Weak transcription	NHLF	lung
14	chr7:102568000-102571800	Weak transcription	Fetal Kidney	kidney
15	chr7:102568000-102573200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:102568200-102571600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:102568200-102572000	Strong transcription	K562	blood
18	chr7:102568200-102573000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:102568200-102573000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:102568200-102573600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:102568400-102569000	Strong transcription	NH-A	brain
22	chr7:102568400-102573000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:102568400-102573000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:102568400-102573800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:102568600-102568800	Enhancers	Aorta	Aorta
26	chr7:102568600-102570400	Weak transcription	HSMMtube	muscle
27	chr7:102568600-102570600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:102568600-102570600	Weak transcription	Ovary	ovary
29	chr7:102568600-102571400	Weak transcription	Fetal Stomach	stomach
30	chr7:102568600-102572600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:102568600-102573000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:102568600-102573000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:102568600-102573200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:102568600-102573400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:102568600-102573800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:102568600-102573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:102568600-102574600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:102568600-102574600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:102568600-102574800	Weak transcription	Osteobl	bone

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