Variant report

Variant	rs17137869
Chromosome Location	chr10:6586386-6586387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10796035	1.00[CHB][hapmap]
rs57831207	1.00[AMR][1000 genomes]
rs60634280	1.00[AMR][1000 genomes]
rs74113511	1.00[AMR][1000 genomes]
rs74114317	1.00[AMR][1000 genomes]
rs74114332	1.00[AMR][1000 genomes]
rs74114335	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6571400-6592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:6583400-6587400	Weak transcription	Psoas Muscle	Psoas
3	chr10:6584000-6586400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr10:6584400-6586600	Flanking Active TSS	Dnd41	blood
5	chr10:6584600-6586400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:6584600-6586400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:6584800-6586400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:6585200-6586400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr10:6585600-6586400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:6585600-6586600	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:6585600-6588000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:6585800-6588600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:6586000-6586400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:6586000-6586400	Transcr. at gene 5' and 3'	Thymus	Thymus
15	chr10:6586000-6587200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:6586000-6587400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6586000-6587400	Weak transcription	Pancreas	Pancrea
18	chr10:6586000-6588400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr10:6586000-6588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:6586000-6588600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:6586000-6588600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:6586000-6588600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr10:6586200-6587400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:6586200-6587400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:6586200-6588400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr10:6586200-6588400	Enhancers	Fetal Thymus	thymus
27	chr10:6586200-6588600	Enhancers	Primary T cells from cord blood	blood
28	chr10:6586200-6588600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:6586200-6589200	Enhancers	Primary T helper cells PMA-I stimulated	--

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