Variant report

Variant	rs60634280
Chromosome Location	chr10:6580582-6580583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17137869	1.00[AMR][1000 genomes]
rs57831207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74113511	1.00[AMR][1000 genomes]
rs74114317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74114332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74114335	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6557400-6582400	Weak transcription	Dnd41	blood
2	chr10:6568000-6581200	Weak transcription	K562	blood
3	chr10:6568800-6581200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:6571400-6592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:6572000-6584600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:6573400-6584800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:6574600-6581600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:6578000-6580800	Genic enhancers	Fetal Thymus	thymus
9	chr10:6578200-6580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:6578400-6585000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:6578800-6584600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:6579000-6580600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:6579000-6584600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:6579200-6580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:6579400-6580600	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:6579400-6580800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:6579400-6580800	Genic enhancers	Primary T cells from cord blood	blood
18	chr10:6579400-6581800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:6579400-6584200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:6579600-6580600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:6579600-6580600	Enhancers	Fetal Muscle Leg	muscle
22	chr10:6579600-6580600	Genic enhancers	Thymus	Thymus
23	chr10:6579600-6581400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr10:6579600-6582200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr10:6579600-6583800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:6580000-6580600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:6580000-6580800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:6580000-6584800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr10:6580200-6581000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:6580200-6581800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:6580200-6584000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:6580200-6584200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:6580200-6585000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:6580200-6585000	Weak transcription	Lung	lung
35	chr10:6580400-6580600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:6580400-6580800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:6580400-6581200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:6580400-6583000	Weak transcription	Psoas Muscle	Psoas
39	chr10:6580400-6584600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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