Variant report

Variant	rs17140220
Chromosome Location	chr7:18925557-18925558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16872139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56946519	1.00[EUR][1000 genomes]
rs57527340	1.00[AMR][1000 genomes]
rs58507095	1.00[EUR][1000 genomes]
rs59951772	1.00[EUR][1000 genomes]
rs60383654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60765366	1.00[EUR][1000 genomes]
rs61141393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73312685	1.00[EUR][1000 genomes]
rs73312695	1.00[EUR][1000 genomes]
rs73320004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320031	1.00[AMR][1000 genomes]
rs73320042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7806036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1030062	chr7:18915874-18943409	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18906200-18929200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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