Variant report

Variant	rs73320031
Chromosome Location	chr7:18906119-18906120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16872139	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140166	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140220	1.00[AMR][1000 genomes]
rs57527340	1.00[AMR][1000 genomes]
rs60383654	1.00[AMR][1000 genomes]
rs61141393	1.00[AMR][1000 genomes]
rs73320004	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320006	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18903800-18907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:18904800-18907000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:18904800-18907400	Enhancers	Adipose Nuclei	Adipose
5	chr7:18905000-18907000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:18905200-18907000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:18905200-18908000	Enhancers	NHDF-Ad	bronchial
8	chr7:18905600-18906600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:18905600-18907000	Enhancers	NHLF	lung
10	chr7:18905600-18907200	Enhancers	Osteobl	bone
11	chr7:18905800-18906200	Enhancers	Left Ventricle	heart
12	chr7:18905800-18906200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:18905800-18907000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:18905800-18907000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:18905800-18907000	Enhancers	Hela-S3	cervix
16	chr7:18905800-18907000	Enhancers	HMEC	breast
17	chr7:18905800-18907000	Enhancers	HSMM	muscle
18	chr7:18905800-18907000	Enhancers	NH-A	brain
19	chr7:18905800-18907200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:18906000-18906600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:18906000-18907000	Enhancers	HSMMtube	muscle
22	chr7:18906000-18907000	Enhancers	NHEK	skin
23	chr7:18906000-18907200	Enhancers	HUVEC	blood vessel

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