Variant report

Variant	rs17140399
Chromosome Location	chr7:18998604-18998605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16872155	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17140387	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs17140423	0.89[LWK][hapmap];0.81[AFR][1000 genomes]
rs2240278	0.83[EUR][1000 genomes]
rs2240279	0.85[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs6461396	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6977642	0.94[ASW][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs7789723	0.81[CEU][hapmap]
rs7802855	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7808451	0.81[CEU][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs993083	0.82[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032870	chr7:18982862-19021763	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538765	chr7:18982862-19021763	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18991400-19025000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18994400-19001600	Weak transcription	Fetal Heart	heart
3	chr7:18997000-19005000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:18997600-18998800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:18997600-18998800	Enhancers	NHDF-Ad	bronchial
6	chr7:18997800-18998800	Enhancers	HSMMtube	muscle
7	chr7:18997800-19000800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:18998000-18998800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:18998000-18998800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:18998200-18999400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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