Variant report

Variant	rs6461396
Chromosome Location	chr7:19001691-19001692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17140387	0.83[CEU][hapmap]
rs17140399	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17140431	0.82[JPT][hapmap]
rs4141042	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs6977304	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6977642	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7789723	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7802855	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7808451	0.92[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032870	chr7:18982862-19021763	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538765	chr7:18982862-19021763	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18991400-19025000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18997000-19005000	Weak transcription	Adipose Nuclei	Adipose
3	chr7:18998800-19004600	Weak transcription	NHDF-Ad	bronchial
4	chr7:18998800-19005400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:18999400-19016400	Weak transcription	HSMM	muscle
6	chr7:19000800-19017600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:19001400-19002000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:19001400-19002000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:19001400-19002000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:19001400-19002000	Enhancers	HMEC	breast
11	chr7:19001600-19002000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr7:19001600-19002000	Enhancers	NH-A	brain
13	chr7:19001600-19002400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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