Variant report

Variant	rs7802855
Chromosome Location	chr7:19005077-19005078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16872155	0.84[CEU][hapmap]
rs17140387	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17140399	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17140423	1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[TSI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2240279	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs2717351	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs6461396	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs6977642	0.94[ASW][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes]
rs7789723	0.85[CEU][hapmap]
rs7808451	0.84[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs993083	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032870	chr7:18982862-19021763	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538765	chr7:18982862-19021763	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18991400-19025000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18998800-19005400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:18999400-19016400	Weak transcription	HSMM	muscle
4	chr7:19000800-19017600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:19002000-19014000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:19002400-19005800	Weak transcription	Fetal Heart	heart
7	chr7:19003800-19016400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:19004600-19007000	Strong transcription	NHDF-Ad	bronchial
9	chr7:19005000-19005400	Strong transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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