Variant report
Variant | rs17142502 |
---|---|
Chromosome Location | chr7:119689079-119689080 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:119544617..119547371-chr7:119688407..119692790,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10085539 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10240920 | 1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs10270493 | 1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs10271592 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10280627 | 1.00[EUR][1000 genomes] |
rs10280758 | 1.00[EUR][1000 genomes] |
rs17142497 | 1.00[EUR][1000 genomes] |
rs1989217 | 0.96[EUR][1000 genomes] |
rs2214705 | 1.00[EUR][1000 genomes] |
rs4727907 | 1.00[ASN][1000 genomes] |
rs55997859 | 1.00[EUR][1000 genomes] |
rs57059935 | 1.00[EUR][1000 genomes] |
rs57537501 | 1.00[ASN][1000 genomes] |
rs57917996 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58149790 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58183333 | 1.00[EUR][1000 genomes] |
rs58192464 | 1.00[EUR][1000 genomes] |
rs58717470 | 1.00[EUR][1000 genomes] |
rs59447974 | 1.00[EUR][1000 genomes] |
rs59585910 | 1.00[EUR][1000 genomes] |
rs59759080 | 1.00[ASN][1000 genomes] |
rs60883005 | 1.00[EUR][1000 genomes] |
rs61485753 | 1.00[EUR][1000 genomes] |
rs61608442 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6951188 | 1.00[EUR][1000 genomes] |
rs6962109 | 1.00[EUR][1000 genomes] |
rs6963042 | 1.00[EUR][1000 genomes] |
rs6966559 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6967778 | 1.00[EUR][1000 genomes] |
rs6975320 | 1.00[EUR][1000 genomes] |
rs6979258 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6979383 | 0.96[EUR][1000 genomes] |
rs6979384 | 0.96[EUR][1000 genomes] |
rs6980091 | 1.00[EUR][1000 genomes] |
rs6980267 | 1.00[EUR][1000 genomes] |
rs6980402 | 1.00[EUR][1000 genomes] |
rs73423841 | 1.00[EUR][1000 genomes] |
rs73423843 | 1.00[EUR][1000 genomes] |
rs73423854 | 0.91[EUR][1000 genomes] |
rs73431725 | 1.00[ASN][1000 genomes] |
rs73431755 | 1.00[EUR][1000 genomes] |
rs73431761 | 1.00[EUR][1000 genomes] |
rs73431762 | 1.00[EUR][1000 genomes] |
rs73431766 | 1.00[EUR][1000 genomes] |
rs73431767 | 1.00[EUR][1000 genomes] |
rs73431773 | 1.00[EUR][1000 genomes] |
rs73431778 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73431782 | 0.88[EUR][1000 genomes] |
rs73431793 | 1.00[EUR][1000 genomes] |
rs73431796 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73433665 | 1.00[EUR][1000 genomes] |
rs73433666 | 1.00[EUR][1000 genomes] |
rs73441608 | 1.00[EUR][1000 genomes] |
rs73441610 | 1.00[EUR][1000 genomes] |
rs73441658 | 1.00[EUR][1000 genomes] |
rs73441659 | 1.00[EUR][1000 genomes] |
rs73441660 | 1.00[EUR][1000 genomes] |
rs73721050 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73721058 | 1.00[EUR][1000 genomes] |
rs73721068 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7782307 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7785001 | 1.00[EUR][1000 genomes] |
rs7795185 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7799093 | 1.00[EUR][1000 genomes] |
rs7805422 | 1.00[EUR][1000 genomes] |
rs7805993 | 1.00[EUR][1000 genomes] |
rs9655832 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9656274 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv470388 | chr7:119464310-119790102 | Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | esv2753623 | chr7:119532049-119770049 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv831112 | chr7:119585169-119776619 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1024054 | chr7:119638121-119700508 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv831113 | chr7:119683515-119886277 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv521233 | chr7:119686018-119697233 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:119686800-119689800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
2 | chr7:119687600-119692800 | Weak transcription | K562 | blood |